Difference between revisions of "WBConfCall 2024.03.21-Agenda and Minutes"
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==Agenda== | ==Agenda== | ||
| − | + | ===OMIM identifier and Disease Ontology (DO) file changes=== | |
*https://github.com/WormBase/website/issues/9444 | *https://github.com/WormBase/website/issues/9444 | ||
*The Disease Ontology (DO) is planning to change the prefix on OMIM IDs from "OMIM:" to "MIM:", tentative release is late April. | *The Disease Ontology (DO) is planning to change the prefix on OMIM IDs from "OMIM:" to "MIM:", tentative release is late April. | ||
| + | *Links: | ||
| + | **https://omim.org/help/linking#1_7 | ||
| + | **https://github.com/DiseaseOntology/HumanDiseaseOntology/issues/1301 | ||
*Need to update any WB pipelines accordingly that might be affected by this change. Apparently they will put out test files | *Need to update any WB pipelines accordingly that might be affected by this change. Apparently they will put out test files | ||
*Affected: OMIM ids are in the manual curation at Caltech postgres database but don't show on website (check if dumped for data upload) | *Affected: OMIM ids are in the manual curation at Caltech postgres database but don't show on website (check if dumped for data upload) | ||
*Affected: OMIM ids coming from the "potential models" pipeline run at Hinxton for "Potential models disease display" on WB website | *Affected: OMIM ids coming from the "potential models" pipeline run at Hinxton for "Potential models disease display" on WB website | ||
| + | *DO test files are out: | ||
| + | **MIM - https://github.com/DiseaseOntology/HumanDiseaseOntology/tree/mim_test_release | ||
| + | **Acronym tags - https://github.com/DiseaseOntology/HumanDiseaseOntology/tree/acronym_test | ||
| + | *Ticket in WormBase GitHub related to OMIM and DO file changes: https://github.com/WormBase/website/issues/9444 --please add to this ticket so we can keep all the changes needed in one place | ||
| + | |||
| + | ===WS292=== | ||
| + | *delivered on time on 29th Feb. Announced on Slack #ws-build but only 3 peeple saw the message.* | ||
| + | |||
| + | |||
| + | ===WS293=== | ||
| + | *data upload 15th April or any time preferable for Caltech.* | ||
| + | *No need to chage schema for update of ribosomal genes/protein names. https://github.com/WormBase/website/issues/9400* | ||
| + | |||
| + | |||
| + | ===Help desk officer roster=== | ||
| + | Who should be taken off and who should be added on? | ||
| + | *<http://wiki.wormbase.org/index.php/Help_desk_schedule>* | ||
Latest revision as of 16:07, 4 April 2024
Contents
Agenda
OMIM identifier and Disease Ontology (DO) file changes
- https://github.com/WormBase/website/issues/9444
- The Disease Ontology (DO) is planning to change the prefix on OMIM IDs from "OMIM:" to "MIM:", tentative release is late April.
- Links:
- Need to update any WB pipelines accordingly that might be affected by this change. Apparently they will put out test files
- Affected: OMIM ids are in the manual curation at Caltech postgres database but don't show on website (check if dumped for data upload)
- Affected: OMIM ids coming from the "potential models" pipeline run at Hinxton for "Potential models disease display" on WB website
- DO test files are out:
- Ticket in WormBase GitHub related to OMIM and DO file changes: https://github.com/WormBase/website/issues/9444 --please add to this ticket so we can keep all the changes needed in one place
WS292
- delivered on time on 29th Feb. Announced on Slack #ws-build but only 3 peeple saw the message.*
WS293
- data upload 15th April or any time preferable for Caltech.*
- No need to chage schema for update of ribosomal genes/protein names. https://github.com/WormBase/website/issues/9400*
Help desk officer roster
Who should be taken off and who should be added on?
