Difference between revisions of "WBConfCall 2023.04.20-Agenda and Minutes"
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* Planning for the WB workshop; anything to discuss? | * Planning for the WB workshop; anything to discuss? | ||
| − | == | + | == AWS credentials == |
* WB needs Genes from nameserver, which is on AWS, so need creds or AMI ? | * WB needs Genes from nameserver, which is on AWS, so need creds or AMI ? | ||
** TH | ** TH | ||
Revision as of 15:08, 17 April 2023
Contents
Agenda and Minutes
- Below is mostly agenda and minutes from 2023-04-06 meeting - will update before 2023-04-20
Help Desk
- Please double-check any tickets assigned to you and close, if you can
- WBPaper00049101 Curation question - this looks to be a question about community phenotype curation; I've assigned it to Chris for now.
- Chris replied
- My script is using downloads.wormbase.org - Todd replied; will leave open for now in case there's more follow up
- Hello, could you please reference.... - I'm leaving this open as a reminder to follow-up with Ranjana and Valerio about references for automated descriptions
- {"readyState": 4,"requestURL": "/rest/widget/variation/WBVar00543472/molecular_details","status": 500,"statusText": "Internal Server Error"} - there are three similar tickets for this issue. Paolo replied on one, but I'm leaving them open in case there's still work to do.
- The search directory on the top right.... - request to help with search behavior. Todd, Scott, and Paolo have commented.
Links to Alliance
- Chris spreadsheet for All Hands face 2 face for places to link WormBase to the Alliance, even before trying to embed Alliance widgets. Chris can coordinate with web team. Will add link here later. Will make sure OICR is aware
- Spreadsheet here: https://docs.google.com/spreadsheets/d/1BbZOddok3ktosgWd2FSIy24wky22ldZXfqS-93blvuA/edit?usp=sharing
- New WB GitHub tickets here:
IWM Meeting
- Planning for the WB workshop; anything to discuss?
AWS credentials
- WB needs Genes from nameserver, which is on AWS, so need creds or AMI ?
- TH
- I will give a post-mortem of the recent credential leak at the next conference call.
- The preferred and recommended way to do this would be via an assumed role, not dedicated AWS CLI credentials.
- I think you mean instance? AMIs are images of instances. IMHO a stand-alone instance is overkill, and already have instances available to run a cron.
- Juancarlos
- That's great. I don't know much about AWS. If you're able to set up a cronjob to daily
- java -cp wb-names-export.jar clojure.main -m wormbase.names.export gene genes.csv
- And put the output genes.csv somewhere web accessible, I think that's all Caltech would need.
- I don't know much more about it, other than Matt Russell told me to run that (we went back and forth a bunch of times before it worked).
- Here's a copy of the .jar file
- That's great. I don't know much about AWS. If you're able to set up a cronjob to daily
- Thanks, JC! We can make that work from one of our persistent instances. I will look when I return from vacation.
- TH
