Difference between revisions of "WBConfCall 2023.03.02-Agenda and Minutes"
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== Help Desk == | == Help Desk == | ||
| − | * #8959 Is it possible to get WS276 JBrowse again? | + | * #8959 Is it possible to get WS276 JBrowse again? Scott set it up. |
| − | * #8965 I have tried downloading gene data to CVS or any other format. It only shows html format. It seems to be the links for all buttons are broken. | + | * #8965 I have tried downloading gene data to CVS or any other format. It only shows html format. It seems to be the links for all buttons are broken. This is probably related to the Caltech power outage today. |
| − | * #8966 C. inopinata ortholog info? | + | * #8966 C. inopinata ortholog info? This is part of the discussion about non-elegans species community curation |
== New elegans assemblies == | == New elegans assemblies == | ||
Revision as of 17:42, 2 March 2023
Contents
Help Desk
- #8959 Is it possible to get WS276 JBrowse again? Scott set it up.
- #8965 I have tried downloading gene data to CVS or any other format. It only shows html format. It seems to be the links for all buttons are broken. This is probably related to the Caltech power outage today.
- #8966 C. inopinata ortholog info? This is part of the discussion about non-elegans species community curation
New elegans assemblies
- VC2010 (CGC1) from Erich Schwarz (Cornell)
- 20 new assemblies from Cristian Riccio (Sanger) https://github.com/WormBase/website/issues/8958
S. ratti community curation
- What is the current WormBase-preferred method of receiving community-driven manual curation data for S. ratti and what types of changes are sufficient?
- Gene pages at the Alliance
- Would minimally require a Basic Gene Information (BGI) JSON submission to the Alliance File Management System (FMS)
- BGI entries minimally require primary key (curie), taxon, symbol, and SO term
- agr_schema ingest JSON specifications: https://github.com/alliance-genome/agr_schemas/tree/master/ingest
- gene.json specification: https://github.com/alliance-genome/agr_schemas/blob/master/ingest/gene/gene.json
- basicGeneticEntity specification: https://github.com/alliance-genome/agr_schemas/blob/master/ingest/basicGeneticEntity.json
C. briggsae
- piRNAs from Wen Tang (Ohio State University College of Medicine) https://github.com/WormBase/website/issues/8962
IWM 2023
- Parasite workshop invite WormBase to participate in their discussion on how to establish gold standards on parasite community curation
WormBase ParaSite
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- Posted on WB blog
