WBConfCall 2023.03.02-Agenda and Minutes

Help Desk

• #8959 Is it possible to get WS276 JBrowse again?
• #8965 I have tried downloading gene data to CVS or any other format. It only shows html format. It seems to be the links for all buttons are broken.
• #8966 C. inopinata ortholog info?

New elegans assemblies

• VC2010 (CGC1) from Erich Schwarz (Cornell)
• 20 new assemblies from Cristian Riccio (Sanger) https://github.com/WormBase/website/issues/8958

S. ratti community curation

• What is the current WormBase-preferred method of receiving community-driven manual curation data for S. ratti and what types of changes are sufficient?
• Gene pages at the Alliance
  • Would minimally require a Basic Gene Information (BGI) JSON submission to the Alliance File Management System (FMS)
  • BGI entries minimally require primary key (curie), taxon, symbol, and SO term
  • agr_schema ingest JSON specifications: https://github.com/alliance-genome/agr_schemas/tree/master/ingest
    • gene.json specification: https://github.com/alliance-genome/agr_schemas/blob/master/ingest/gene/gene.json
    • basicGeneticEntity specification: https://github.com/alliance-genome/agr_schemas/blob/master/ingest/basicGeneticEntity.json

C. briggsae

• piRNAs from Wen Tang (Ohio State University College of Medicine) https://github.com/WormBase/website/issues/8962

IWM 2023

• Parasite workshop invite WormBase to participate in their discussion on how to establish gold standards on parasite community curation

WormBase ParaSite

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• Posted on WB blog