Difference between revisions of "WBConfCall 2023.03.02-Agenda and Minutes"
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== S. ratti community curation == | == S. ratti community curation == | ||
| − | * What is the current WormBase-preferred method of receiving community-driven manual curation data for S. ratti and what types of changes are sufficient? | + | * What is the current WormBase-preferred method of receiving community-driven manual curation data for S. ratti and what types of changes are sufficient? |
| + | * Gene pages at the Alliance | ||
| + | ** Would minimally require a Basic Gene Information (BGI) JSON submission to the Alliance File Management System (FMS) | ||
| + | ** BGI entries minimally require primary key (curie), taxon, symbol, and SO term | ||
| + | ** agr_schema ingest JSON specifications: https://github.com/alliance-genome/agr_schemas/tree/master/ingest | ||
| + | *** gene.json specification: https://github.com/alliance-genome/agr_schemas/blob/master/ingest/gene/gene.json | ||
| + | *** basicGeneticEntity specification: https://github.com/alliance-genome/agr_schemas/blob/master/ingest/basicGeneticEntity.json | ||
== C. briggsae == | == C. briggsae == | ||
Revision as of 17:12, 2 March 2023
Contents
Help Desk
- #8959 Is it possible to get WS276 JBrowse again?
- #8965 I have tried downloading gene data to CVS or any other format. It only shows html format. It seems to be the links for all buttons are broken.
- #8966 C. inopinata ortholog info?
New elegans assemblies
- VC2010 (CGC1) from Erich Schwarz (Cornell)
- 20 new assemblies from Cristian Riccio (Sanger) https://github.com/WormBase/website/issues/8958
S. ratti community curation
- What is the current WormBase-preferred method of receiving community-driven manual curation data for S. ratti and what types of changes are sufficient?
- Gene pages at the Alliance
- Would minimally require a Basic Gene Information (BGI) JSON submission to the Alliance File Management System (FMS)
- BGI entries minimally require primary key (curie), taxon, symbol, and SO term
- agr_schema ingest JSON specifications: https://github.com/alliance-genome/agr_schemas/tree/master/ingest
- gene.json specification: https://github.com/alliance-genome/agr_schemas/blob/master/ingest/gene/gene.json
- basicGeneticEntity specification: https://github.com/alliance-genome/agr_schemas/blob/master/ingest/basicGeneticEntity.json
C. briggsae
- piRNAs from Wen Tang (Ohio State University College of Medicine) https://github.com/WormBase/website/issues/8962
IWM 2023
- Parasite workshop invite WormBase to participate in their discussion on how to establish gold standards on parasite community curation
WormBase ParaSite
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