Difference between revisions of "WBConfCall 2022.03.17-Agenda and Minutes"
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* if we have the data we can generate a similar graph | * if we have the data we can generate a similar graph | ||
* If they offer static images we could bring in as images or the Web Team can display directly on the 'Single cell gene expression graphs' section | * If they offer static images we could bring in as images or the Web Team can display directly on the 'Single cell gene expression graphs' section | ||
+ | * Daniela to talk to Todd and see what is the best way forward | ||
+ | * If we get raw data we can display as CenGen, may be able to reuse Sibyl's code | ||
+ | * Quickly get static images in is #1 priority |
Revision as of 16:16, 17 March 2022
Agenda
Help Desk
- Julie Ahringer asking for a genome-wide mapping of all Ahringer RNAi clones (sjj_* and sjj2_* ?PCR_Product objects) to identify, according to our primary and secondary RNAi mapping criteria, which genes are predicted to be knocked down by each clone
- Hinxton are in touch with her to scope out the size and timing of the work.[MZ]
BioCyc-WB Links
- Report back from follow-up meeting last Thursday with Peter Karp:
- BioCyc will make available pathway images that WB will display, initially, on gene and molecule pages
- We'll also have reciprocal links
- Minutes
Bob Waterson single cell embryo data
- Bob asking if interested in displaying the single cell embryo data from their 2019 Science paper in WormBase
- He has large tables of the tpms per cell type and for the lineage as well as the percent of cells expressing. * He made graphs of these, not interactive
- Could go in the 'Single cell gene expression graphs' section, where Sibyl put in CenGen Data. https://wormbase.org/species/c_elegans/gene/WBGene00001170#c13--10
- Can Web Team display the Bob's graphs, too?
- if we have the data we can generate a similar graph
- If they offer static images we could bring in as images or the Web Team can display directly on the 'Single cell gene expression graphs' section
- Daniela to talk to Todd and see what is the best way forward
- If we get raw data we can display as CenGen, may be able to reuse Sibyl's code
- Quickly get static images in is #1 priority