Difference between revisions of "WBConfCall 2022.03.03-Agenda and Minutes"

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** EBI->CalTech
 
** EBI->CalTech
 
*** Start sending Transgene report
 
*** Start sending Transgene report
*** Author info report.....what sould we do with this?
+
*** Author info report.....what should we do with this?
  
 
* WS285 schema
 
* WS285 schema

Revision as of 15:43, 3 March 2022

Agenda

  • Follow-up to BioCyc presentation
    • From Peter K: "we would be open to discussing further with you the idea of inserting WormCyc pathway diagrams in Wormbase pages."
    • Next steps?
  • Helpdesk


  • CGC data exchange revamp
    • Issues/Fixes
      • Long time since it was run and had support
      • Sanger MySQL NS retired - decoupled as lots of false +ves generates tmp_Ids for manual review.
      • Transgene IDs - The data retrieval and processing broken
      • Sanger->EBI - Infrastructure dependencies
      • CGC_data format - subtle changes over time broke the parser
    • EBI->CalTech
      • Start sending Transgene report
      • Author info report.....what should we do with this?
  • WS285 schema
    • 2 changes:
      • Wen - Expression_cluster tag for Single_Cell_RNASeq //Wen WS285 for CenGen data
      • Daniela - Expression model tag removals
    • Schedule:
      • Models release Friday/Monday March 04/07
      • Data freeze Monday March 28)
    • Baer lab data ingest, possibly coming for WS285
  • WS284 news
    • 90 miRNA gene clusters from MirGeneDB
    • AlphaFold links