WBConfCall 2021.10.07-Agenda and Minutes

Agenda and Minutes

Helpdesk

ftp site questions

• Wormbase - Data Citation Index [Web of Science]
  • Do we still have files that are agnostic wrt release name but always either current or current development?
• Hello, I am trying to download all th...
  • Do we have https downloads links available from the WormBase home page yet?
  • Should all WormBase downloads be available from the same site?
• Related to Add links to the https-driven downloads site

updating laboratory information

• Hello, How can we change the lab repr...

user accounts at WB and the Alliance

• HI Wormbase, I just started an accoun...

e-PCR and gmap tools throwing errors

• e-PCR throwing error
• Server Error: 500 at tools/gmap/run Error M...
  • Three additional tickets describing the same issue: #8382 , #8381 and #8375

tree display

• {"readyState": 4,"requestURL": "/tools/tree/run?in...

WB Genetics manuscript

Thank you so much to everyone for your contributions to content and edits! [Paul D]

Build WS283

Build WS283 has started in Hinxton

New and interesting things: Several model changes, eg to variants

Additional C. briggsae operons Large batch of new strains and variants from KO consortium, CGC and NBRP

AOB

Todd and Magz set the 4 release dates for 2022.

Many thanks for being patient with the EBI FTP migration, which was very unfortunately timed.

Minutes

Web of Science Data Citation Index

• Having some FTP issues
• Also, was accessing a WS276 file; doesn't seem to be a current equivalent:
  • ftp://ftp.wormbase.org/pub/wormbase/releases/current-production-release/species/c_elegans/PRJNA13758/annotation/c_elegans.PRJNA13758.WS276.reuters_citation_index.xml.gz
• Todd: These should be automatically updated; file name may have diverged and broken the link

FTP issues; migration to HTTPS download site

• Paul D added link from "Downloads" to User Guide with relevant links
• When WS282 is released, the live link will be added (today or tomorrow)