WBConfCall 2021.08.05-Agenda and Minutes

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Agenda and Minutes

Helpdesk

No outstanding issue.

Build 282 progress

Stavros

WS282 build is now ready for making FTP site. If anyone likes to include news like new datasets, proposed changes/forthcoming data or model changes please let me know by the end of today (August 5th). Apologies for short notice.

Already included:

  • Model Changes:

Incorporated Antibody changes


  • Proposed Changes / Forthcoming Data:

Deprecate tags in WS283 in the #Molecular_change hash that has been replaced by VEP:

    #Molecular_change        
                       Missense
                       Silent
                       Nonsense
                       Splice_site
                       Frameshift
                       Readthrough
                       Intron
                       Coding_exon
                       Noncoding_exon
                       Promoter
                       UTR_3
                       UTR_5
                       Regulatory_feature
                       Genomic_neighbourhood

Genetics paper

[Paul D]

Quite a few of sections have had contributions....thank you.

Could people check what has been asigned to them as some parts of WB are under represented at the moment.

Co-ordinated submission from Alliance stakeholders, I haddn't heard anything on the AGR Slack so I asked who was submitting.

Paul D. - coordinating WormBase 
Stacia Engel - SGD plans to make a submission
Paul Sternberg - coordinating Alliance Central article
Yvonne Bradford - ZFIN plans to submit
Sian Gramates - coordinating the FlyBase paper

Paul S. I am a little unsure of the deadline for submission/what edition are we aiming for?

Paul S: Deadline for submission is September to be published in March 2022. Valerie Wood will submit an article for PomBase

Computer cluster migration - Hinxton

Magz - for awareness we are moving from one computer cluster to another one

The new computer cluster will be faster and allow more space.

Hinxton will have limited capacity to deal with other issued while in transition. Some computation power will be interrupted. Name Server and FTP will not be affected.

Schema Change deadline

Usually three weeks before data freeze. Paul D will add the dates to WB calendar.