Difference between revisions of "WBConfCall 2021.06.17-Agenda and Minutes"
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= Agenda and Minutes= | = Agenda and Minutes= | ||
+ | |||
+ | = WS281 issues = | ||
+ | * Empty assemblies[] in the ASSEMBLIES.WS281.json file | ||
+ | * discordant feature names in Ace and GFF for (at least some) Tier III species | ||
+ | |||
=== Caltech === | === Caltech === |
Revision as of 16:24, 16 June 2021
Help Desk
Open tickets:
Agenda and Minutes
WS281 issues
- Empty assemblies[] in the ASSEMBLIES.WS281.json file
- discordant feature names in Ace and GFF for (at least some) Tier III species
Caltech
CenGen data
- Initially discussed to have the bar plot images going in as image data
- CenGen group wants interactive bar plots similar to the modENCODE bar plots currently displayed in the FPKM expression data section on the expression widget. That way users could hover over a bar plot and see the cell type, the expression value (TPM, in our case) and the proportion of cells of each neuron type expressing the gene.
- They can provide the underlying data and have the WB team generate interactive plots for each gene
We could: 1. bring the data files in OR 2. call the CenGen API on the fly
- The first approach may be more work but better in the long run as we store the data
- Can the files be stored on the ftp and the plots be displayed on the expression widget?
- Bring in data both as pictures and interactive bar plots