Difference between revisions of "WBConfCall 2021.06.17-Agenda and Minutes"

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(Created page with "= Help Desk = Open tickets: = Agenda and Minutes= Caltech: Hinxton:")
 
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= Agenda and Minutes=
 
= Agenda and Minutes=
  
Caltech:
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=== Caltech ===
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==== CenGen  data ====
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*Initially discussed to have the bar plot images going in as image data
 +
*CenGen group wants interactive bar plots similar to the modENCODE bar plots currently displayed in the FPKM expression data section on the expression widget. That way users could hover over a bar plot and see the cell type, the expression value (TPM, in our case) and the proportion of cells of each neuron type expressing the gene.
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*They can provide the underlying data and have the WB team generate interactive plots for each gene
 +
We could: 1. bring the data files in OR 2. call the CenGen API on the fly
 +
*The first approach may be more work but better in the long run as we store the data
 +
*Can the files be stored on the ftp and the plots be displayed on the expression widget?
 +
*Bring in data both as pictures and interactive bar plots
  
Hinxton:
+
===Hinxton===

Revision as of 11:53, 16 June 2021

Help Desk

Open tickets:


Agenda and Minutes

Caltech

CenGen data

  • Initially discussed to have the bar plot images going in as image data
  • CenGen group wants interactive bar plots similar to the modENCODE bar plots currently displayed in the FPKM expression data section on the expression widget. That way users could hover over a bar plot and see the cell type, the expression value (TPM, in our case) and the proportion of cells of each neuron type expressing the gene.
  • They can provide the underlying data and have the WB team generate interactive plots for each gene

We could: 1. bring the data files in OR 2. call the CenGen API on the fly

  • The first approach may be more work but better in the long run as we store the data
  • Can the files be stored on the ftp and the plots be displayed on the expression widget?
  • Bring in data both as pictures and interactive bar plots

Hinxton