Revision as of 15:08, 3 June 2021

Help Desk

Open tickets:

Caltech:

Hinxton (follow on):

Expanded collection of C. elegans comparator genomes by adding a chromosome-scale draft C. bovis assembly {PMID:32109387}, and nine further draft assemblies of newly described Caenorhabditis species {PMID:1007946} and replaced two C. remanei strains (PX356 and PX439) with animproved chromosome-scale assembly of C. remanei PX506 {PMID:32111628}.

Hinxton has a GSoC student (Rishab) who will be working on extracting the genomic location of variations from full-text papers

There are still some issues with the C. elegans GAF and GPI files on the WormBase ftp site that are causing the GO release to fail
Corrected files are available on the EBI ftp site
If we haven't already, can we resync the ftp server?

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 Caltech:
-Hinxton (actions from last week):
+Hinxton (follow on):
-* Expanded collection of C. elegans comparator genomes by adding a chromosome-scale draft C. bovis assembly {PMID:32109387}, and nine further draft assemblies of newly described Caenorhabditis species {PMID:1007946}
+* Expanded collection of C. elegans comparator genomes by adding a chromosome-scale draft C. bovis assembly {PMID:32109387}, and nine further draft assemblies of newly described Caenorhabditis species {PMID:1007946} and replaced two C. remanei strains (PX356 and PX439) with animproved chromosome-scale assembly of C. remanei PX506 {PMID:32111628}.
-* Replaced two C. remanei strains (PX356 and PX439) with animproved chromosome-scale assembly of C. remanei PX506 {PMID:32111628}.
-* Ranjana: could do blog post about new species.
-* Stavros will post on #general in slack.
-* Paul D: We'll put something together when WS281 hits.
-== WB Genetics paper update (actions from last week) ==
-* Paul Davis looking to submit early September with the other AGR Mods.
-* Draft layout here: https://docs.google.com/document/d/1zBaGNtByCNJC8CxheKW_ewja5N1iyMzDBCu_JcYFXBE/edit?usp=sharing
-* Please add comments or additions to any of the Topic areas already listed.
-* Needs to coordinate with other MODs in August, let's get this together before then.