Difference between revisions of "WBConfCall 2021.02.04-Agenda and Minutes"
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== GAF files == | == GAF files == | ||
* Are GAF files C. elegans specific? We have 39 expression annotations to other species (remanei, brenneri, brugia). ok to leave them out? If not, make sure that those Expression_objects don't make it to the GAF. | * Are GAF files C. elegans specific? We have 39 expression annotations to other species (remanei, brenneri, brugia). ok to leave them out? If not, make sure that those Expression_objects don't make it to the GAF. | ||
| − | * Chris has written up a Wiki page to point to GAF specifications | + | * Chris has written up a Wiki page to point to GAF specifications as well as describe the format details and suggest a new header for each GAF in our FTP "ONTOLOGY" directory |
** To resolve GitHub ticket: https://github.com/WormBase/website/issues/7900 | ** To resolve GitHub ticket: https://github.com/WormBase/website/issues/7900 | ||
** Current "ONTOLOGY" directory on FTP: ftp://ftp.wormbase.org/pub/wormbase/releases/current-production-release/ONTOLOGY/ | ** Current "ONTOLOGY" directory on FTP: ftp://ftp.wormbase.org/pub/wormbase/releases/current-production-release/ONTOLOGY/ | ||
** New Wiki page: https://wiki.wormbase.org/index.php/WormBase_gene_association_file | ** New Wiki page: https://wiki.wormbase.org/index.php/WormBase_gene_association_file | ||
** We would like to push ahead with modifying the headers of these association files | ** We would like to push ahead with modifying the headers of these association files | ||
Revision as of 20:32, 3 February 2021
Help Desk
- ePCR "position" function broken - https://github.com/WormBase/website/issues/8081
- Typo in gene WBGene00019747 name - https://github.com/WormBase/website/issues/8080
- Phenotype community curation recognition - https://github.com/WormBase/website/issues/8076
- Miller CeNGEN data links brainstorm - https://github.com/WormBase/website/issues/8075
- New JBrowse polyA Atlas tracks - https://github.com/WormBase/website/issues/8070
- Paper upload directly from authors - https://github.com/WormBase/website/issues/8068
- Paper anatomy function links - https://github.com/WormBase/website/issues/8065
Agenda and Minutes
GAF files
- Are GAF files C. elegans specific? We have 39 expression annotations to other species (remanei, brenneri, brugia). ok to leave them out? If not, make sure that those Expression_objects don't make it to the GAF.
- Chris has written up a Wiki page to point to GAF specifications as well as describe the format details and suggest a new header for each GAF in our FTP "ONTOLOGY" directory
- To resolve GitHub ticket: https://github.com/WormBase/website/issues/7900
- Current "ONTOLOGY" directory on FTP: ftp://ftp.wormbase.org/pub/wormbase/releases/current-production-release/ONTOLOGY/
- New Wiki page: https://wiki.wormbase.org/index.php/WormBase_gene_association_file
- We would like to push ahead with modifying the headers of these association files
