Difference between revisions of "WBConfCall 2021.01.21-Agenda and Minutes"

From WormBaseWiki
Jump to navigationJump to search
 
(One intermediate revision by one other user not shown)
Line 1: Line 1:
 
= Help Desk =
 
= Help Desk =
 
* ePCR tool is not working. [https://github.com/WormBase/website/issues/8049 #8049] - Electronic-PCR (e-PCR) is retiring, use [https://ncbiinsights.ncbi.nlm.nih.gov/2017/06/28/e-pcr-is-retiring-use-primer-blast/ Primer-BLAST] instead?
 
* ePCR tool is not working. [https://github.com/WormBase/website/issues/8049 #8049] - Electronic-PCR (e-PCR) is retiring, use [https://ncbiinsights.ncbi.nlm.nih.gov/2017/06/28/e-pcr-is-retiring-use-primer-blast/ Primer-BLAST] instead?
 +
 +
Alternative at UCSC [https://www.genome.ucsc.edu/cgi-bin/hgPcr?wp_target=&db=0&org=C.+elegans]
  
 
* The [https://wormbase.org/about/userguide/nomenclature#65b9k4hiedca01mgl37f2j8--10- nomenclature] page can not be printed as shown in the page. The dialog boxes are overlapped with the contents in the printout. [https://github.com/WormBase/website/issues/8055 #8055],[https://github.com/WormBase/website/issues/8056 #8056] - Only Copy&paste of the contents is the solution now.
 
* The [https://wormbase.org/about/userguide/nomenclature#65b9k4hiedca01mgl37f2j8--10- nomenclature] page can not be printed as shown in the page. The dialog boxes are overlapped with the contents in the printout. [https://github.com/WormBase/website/issues/8055 #8055],[https://github.com/WormBase/website/issues/8056 #8056] - Only Copy&paste of the contents is the solution now.
Line 9: Line 11:
  
 
= Agenda and Minutes=
 
= Agenda and Minutes=
 +
===ePCR tool===
 +
*The tool was not working because of disconnecting the blast database. After fixing the connection, ePCR tool is working now.
 +
*Other ePCR tool is available at UCSC.
 +
 +
===Wormbase wen page printing issue===
 +
*User couldn't print out the nomenclature document page as displayed in the web page.
 +
*Sibyl is now working on it to solve the issue.
 +
 +
===References for the Genome browser tracks===
 +
*We must keep the sources and references of every tracks in the genome browser for users as well as curation processes.
 +
*Do we need to reorganize the Jbrowse tracks after migrating it to AGR? Organizing the tracks is needed to add more useful features like cell-specific gene expression data or predicted TF binding site/motif.

Latest revision as of 21:19, 21 January 2021

Help Desk

  • ePCR tool is not working. #8049 - Electronic-PCR (e-PCR) is retiring, use Primer-BLAST instead?

Alternative at UCSC [1]

  • The nomenclature page can not be printed as shown in the page. The dialog boxes are overlapped with the contents in the printout. #8055,#8056 - Only Copy&paste of the contents is the solution now.
  • Life stage specific expression data for gene set. #8057- Daniela responded this morning
  • Hello, I’m a student in Dr. Andrew Fi... [2]. Source of data is unknown

Agenda and Minutes

ePCR tool

  • The tool was not working because of disconnecting the blast database. After fixing the connection, ePCR tool is working now.
  • Other ePCR tool is available at UCSC.

Wormbase wen page printing issue

  • User couldn't print out the nomenclature document page as displayed in the web page.
  • Sibyl is now working on it to solve the issue.

References for the Genome browser tracks

  • We must keep the sources and references of every tracks in the genome browser for users as well as curation processes.
  • Do we need to reorganize the Jbrowse tracks after migrating it to AGR? Organizing the tracks is needed to add more useful features like cell-specific gene expression data or predicted TF binding site/motif.