Difference between revisions of "WBConfCall 2021.01.07-Agenda and Minutes"

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* The following is the Overview for the gene egl-1 (gene description): https://github.com/WormBase/website/issues/8008 - just checking in if Ranjana got back to the user
 
* The following is the Overview for the gene egl-1 (gene description): https://github.com/WormBase/website/issues/8008 - just checking in if Ranjana got back to the user
 
* Gene production information (gpi) file for WS279 has lost UniProtKB mappings for some WB protein identifiers [https://github.com/WormBase/website/issues/8031 #8031] - need to re-sync the WB ftp site - Thanks!
 
* Gene production information (gpi) file for WS279 has lost UniProtKB mappings for some WB protein identifiers [https://github.com/WormBase/website/issues/8031 #8031] - need to re-sync the WB ftp site - Thanks!
** We will need to resync the WB FTP site
 
  
= Agenda =
+
= Agenda and Minutes=
* Biomart webinar: Monday Jan 11th, 8 am Pacific - Faye will present, Ranjana will host, Daniela will monitor the chat
+
* Biomart webinar: Monday Jan 11th, 8 am Pacific - Faye will present, Ranjana will host, Daniela and Karen will monitor the chat
 
* Build 280 has commenced, follow #build280 slack channel for updates
 
* Build 280 has commenced, follow #build280 slack channel for updates
  
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* Pipeline is up and running, sending out emails to variation-first-pass-group@wormbase.org - changed to no-email option as requested [PD]
 
* Pipeline is up and running, sending out emails to variation-first-pass-group@wormbase.org - changed to no-email option as requested [PD]
 
* Need to add outreach@wormbase.org to the vfp google group - added by Magz
 
* Need to add outreach@wormbase.org to the vfp google group - added by Magz
 +
* as soon as we start evaluating the results we will continue with Hinxton to improve the pipeline
 +
 +
== Alliance Disease WG ==
 +
* The disease WG will split into 2 subgroups
 +
* Someone from Hinxton should be on the Disease alliance subgroup for the allele discussion
 +
* Allele data model is different than other MODs. Need to consolidate.
 +
* might have to a migrate to a new way of thinking and create data models that are more accommodating. A minimal model might not fit all
 +
* Cindy will contact top management
 +
* Madga will try to join  the call and will follow up with Cindy
 +
 +
== Neural Network (NN) ==
 +
* Michael Muller changed the SVM results to NN
 +
* Does Hinxton use the curation  status form? only Gary W
 +
* How is Hinxton notified about SVM results? email
 +
* Hinxton will take a look at this and will get back to Caltech
 +
 +
== Alliance UI ==
 +
* Need of organism specific pages
 +
* Anyone interested in designing the landing pages? Todd will help with this
 +
 +
== Parasite ==
 +
* Has anyone been in touch with the planarian community?
 +
* Kevin talked with Jochen Rink about extending parasite to other taxa but the planarian specific databases (PlanMine) might be more appropriate
 +
* We can think on onboarding them as another Alliance member

Latest revision as of 17:22, 7 January 2021

Help Desk

Agenda and Minutes

  • Biomart webinar: Monday Jan 11th, 8 am Pacific - Faye will present, Ranjana will host, Daniela and Karen will monitor the chat
  • Build 280 has commenced, follow #build280 slack channel for updates

Variation First Pass

  • Pipeline is up and running, sending out emails to variation-first-pass-group@wormbase.org - changed to no-email option as requested [PD]
  • Need to add outreach@wormbase.org to the vfp google group - added by Magz
  • as soon as we start evaluating the results we will continue with Hinxton to improve the pipeline

Alliance Disease WG

  • The disease WG will split into 2 subgroups
  • Someone from Hinxton should be on the Disease alliance subgroup for the allele discussion
  • Allele data model is different than other MODs. Need to consolidate.
  • might have to a migrate to a new way of thinking and create data models that are more accommodating. A minimal model might not fit all
  • Cindy will contact top management
  • Madga will try to join the call and will follow up with Cindy

Neural Network (NN)

  • Michael Muller changed the SVM results to NN
  • Does Hinxton use the curation status form? only Gary W
  • How is Hinxton notified about SVM results? email
  • Hinxton will take a look at this and will get back to Caltech

Alliance UI

  • Need of organism specific pages
  • Anyone interested in designing the landing pages? Todd will help with this

Parasite

  • Has anyone been in touch with the planarian community?
  • Kevin talked with Jochen Rink about extending parasite to other taxa but the planarian specific databases (PlanMine) might be more appropriate
  • We can think on onboarding them as another Alliance member