WBConfCall 2020.12.17-Agenda and Minutes
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Agenda
- WormBase Social Hour?
- WormBase list of data types to bring into the Alliance
- CeNGEN - C. elegans Neuronal Gene Expression Network
Minutes
- CeNGEN
- Will talk in January for integration into WormBase: who should be on that call?
- Eduardo et al.
- Eduardo has several ideas about how to integrate and display
- Has slides (for Alliance) with a breakdown of technology over time, species represented (mostly human and mouse)
- First C. elegans dataset in 2017; another in 2019 with re-annotation of 2017 dataset
- scRNA-seq data sets are in a big sparse matrix
- Data in raw FASTQ file --> read alignments --> unfiltered matrix --> barcode filtering --> filtered matrix
- Data deposited usually at SRA and ENA, but not raw data, usually the already filtered matrix (sometimes even more processed than that)
- Human Cell Atlas Data Portal (data.humacellatlas.org) (only human and mouse; not interested in other species)
- Will talk in January for integration into WormBase: who should be on that call?