Difference between revisions of "WBConfCall 2020.12.17-Agenda and Minutes"
From WormBaseWiki
Jump to navigationJump to searchm |
m |
||
Line 20: | Line 20: | ||
*** Data deposited usually at SRA and ENA, but not raw data, usually the already filtered matrix (sometimes even more processed than that) | *** Data deposited usually at SRA and ENA, but not raw data, usually the already filtered matrix (sometimes even more processed than that) | ||
*** Human Cell Atlas Data Portal (data.humacellatlas.org) (only human and mouse; not interested in other species) | *** Human Cell Atlas Data Portal (data.humacellatlas.org) (only human and mouse; not interested in other species) | ||
+ | *** COVID19 cell atlas (covid19cellatlas.org) |
Revision as of 16:54, 17 December 2020
Help Desk
Agenda
- WormBase Social Hour?
- WormBase list of data types to bring into the Alliance
- CeNGEN - C. elegans Neuronal Gene Expression Network
Minutes
- CeNGEN
- Will talk in January for integration into WormBase: who should be on that call?
- Eduardo et al.
- Eduardo has several ideas about how to integrate and display
- Has slides (for Alliance) with a breakdown of technology over time, species represented (mostly human and mouse)
- First C. elegans dataset in 2017; another in 2019 with re-annotation of 2017 dataset
- scRNA-seq data sets are in a big sparse matrix
- Data in raw FASTQ file --> read alignments --> unfiltered matrix --> barcode filtering --> filtered matrix
- Data deposited usually at SRA and ENA, but not raw data, usually the already filtered matrix (sometimes even more processed than that)
- Human Cell Atlas Data Portal (data.humacellatlas.org) (only human and mouse; not interested in other species)
- COVID19 cell atlas (covid19cellatlas.org)
- Will talk in January for integration into WormBase: who should be on that call?