Difference between revisions of "WBConfCall 2020.08.20-Agenda and Minutes"
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** Email on Monday Aug 17 | ** Email on Monday Aug 17 | ||
| − | === | + | ===Handling species lists=== |
* Handling species in WormBase and Alliance | * Handling species in WormBase and Alliance | ||
** Want to dump "affected_by_pathogen" field for phenotypes listing pathogenic species | ** Want to dump "affected_by_pathogen" field for phenotypes listing pathogenic species | ||
Revision as of 14:37, 20 August 2020
Contents
Agenda
WS279 Data Freeze
- When?
Help Desk
- uncharacterized eukaryotic protein-coding gene with an intron
- Help with annotation file for ws235 version
- Email on Monday Aug 17
Handling species lists
- Handling species in WormBase and Alliance
- Want to dump "affected_by_pathogen" field for phenotypes listing pathogenic species
- Want/need to synchronize Postgres with Hinxton and ACEDB
- Would like a primary species list
- Should clean up existing species data, then possibly move to a centralized species tool at the Alliance
- Source data: NCBITaxonomy
- There is some churn on taxonomy ids, e.g. one taxonomy id is merged into another (although it appears to be relatively infrequent compared to other CVs or ontologies)
- We will need a plan for tracking changes and updating our curation data as needed
Minutes
Topic 1
- Info
