Difference between revisions of "WBConfCall 2020.08.20-Agenda and Minutes"

From WormBaseWiki
Jump to navigationJump to search
Line 17: Line 17:
 
** Should clean up existing species data, then possibly move to a centralized species tool at the Alliance
 
** Should clean up existing species data, then possibly move to a centralized species tool at the Alliance
 
** Source data: NCBITaxonomy
 
** Source data: NCBITaxonomy
*** There is some churn (although it appears to be relatively low-level) on taxonomy ids, e.g. one taxonomy id is merged into another
+
*** There is some churn on taxonomy ids, e.g. one taxonomy id is merged into another (although it appears to be relatively infrequent compared to other CVs or ontologies) 
*** We will need a plan for tracking that and updating our curation data as needed
+
*** We will need a plan for tracking changes and updating our curation data as needed
  
 
==Minutes==
 
==Minutes==
 
===Topic 1===
 
===Topic 1===
 
* Info
 
* Info

Revision as of 13:18, 20 August 2020

Agenda

WS279 Data Freeze

  • When?

Help Desk

Topic 1

  • Handling species in WormBase and Alliance
    • Want to dump "affected_by_pathogen" field for phenotypes listing pathogenic species
    • Want/need to synchronize Postgres with Hinxton and ACEDB
    • Would like a primary species list
    • Should clean up existing species data, then possibly move to a centralized species tool at the Alliance
    • Source data: NCBITaxonomy
      • There is some churn on taxonomy ids, e.g. one taxonomy id is merged into another (although it appears to be relatively infrequent compared to other CVs or ontologies)
      • We will need a plan for tracking changes and updating our curation data as needed

Minutes

Topic 1

  • Info