Difference between revisions of "WBConfCall 2020.08.20-Agenda and Minutes"
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** Would like a primary species list | ** Would like a primary species list | ||
** Should clean up existing species data, then possibly move to a centralized species tool at the Alliance | ** Should clean up existing species data, then possibly move to a centralized species tool at the Alliance | ||
+ | ** Source data: NCBITaxonomy | ||
+ | *** There is some churn (although it appears to be relatively low-level) on taxonomy ids, e.g. one taxonomy id is merged into another | ||
+ | *** We will need a plan for tracking that and updating our curation data as needed | ||
==Minutes== | ==Minutes== | ||
===Topic 1=== | ===Topic 1=== | ||
* Info | * Info |
Revision as of 13:14, 20 August 2020
Agenda
WS279 Data Freeze
- When?
Help Desk
- uncharacterized eukaryotic protein-coding gene with an intron
- Help with annotation file for ws235 version
- Email on Monday Aug 17
Topic 1
- Handling species in WormBase and Alliance
- Want to dump "affected_by_pathogen" field for phenotypes listing pathogenic species
- Want/need to synchronize Postgres with Hinxton and ACEDB
- Would like a primary species list
- Should clean up existing species data, then possibly move to a centralized species tool at the Alliance
- Source data: NCBITaxonomy
- There is some churn (although it appears to be relatively low-level) on taxonomy ids, e.g. one taxonomy id is merged into another
- We will need a plan for tracking that and updating our curation data as needed
Minutes
Topic 1
- Info