Difference between revisions of "WBConfCall 2020.05.06-Agenda and Minutes"

From WormBaseWiki
Jump to navigationJump to search
 
(10 intermediate revisions by 3 users not shown)
Line 1: Line 1:
 
==Agenda==
 
==Agenda==
 +
 +
Note that there is a copy of this page at [[WBConfCall_2020.05.07-Agenda_and_Minutes]] (which is the date that the meeting actually occurred).
 +
 +
====Staff changes at Hinxton====
 +
 +
Welcom Mark QT!
 +
 
====Model changes for WS278====
 
====Model changes for WS278====
  
==== Disease data handling====
+
===== Disease data handling=====
 
Ranjana proposed for WS278
 
Ranjana proposed for WS278
  
Line 15: Line 22:
 
Could you check the model again Ranjana.
 
Could you check the model again Ranjana.
  
==== ECO code data model ====
+
===== ECO code data model =====
 
Kimberly proposed for WS278
 
Kimberly proposed for WS278
  
Line 30: Line 37:
  
 
====WS278 build schedule====
 
====WS278 build schedule====
 +
 +
''Suggestion: be up front on twitter, website and wiki and follow the more flexible schedule.''
  
 
Set up a slack channel to discuss this #build268.
 
Set up a slack channel to discuss this #build268.
 +
 +
* HX preference would be to push the WS278 release schedule back by 2 weeks
 +
 +
Adjusted Schedule to what was posted in the slack channel:
 +
 +
29th May - Models freeze
 +
19th June - Upload
 +
22nd June-17th July - ACeDB production
 +
20th-24th July - Datomic migration
 +
24th July End Hinxton release and final handover to OICR
 +
 +
originally:
 +
15th May - Models freeze
 +
5th June - Upload
 +
8th June-3rd July - ACeDB production      <!!!!!!EBI Farm move 22nd June - 3rd July!!!!!!!>
 +
6th-10th July - Datomic migration
 +
10th July End Hinxton release and final handover to OICR
  
 
====Outstanding issues====
 
====Outstanding issues====
  
[https://github.com/WormBase/website/issues/7663 #7663 Homology group Overview Widget] Paul Davis commented and reassigned to Michael P.
+
[https://github.com/WormBase/website/issues/7663 #7663 Homology group Overview Widget] Paul Davis commented and reassigned to Michael P. who has also commented.
  
[https://github.com/WormBase/website/issues/7637 #7637 Making retractions more visible] Kimberly Van Auken, please comment.
+
[https://github.com/WormBase/website/issues/7637 #7637 Making retractions more visible] Kimberly Van Auken already commented.
  
 
====Nice note about one recently closed issue====
 
====Nice note about one recently closed issue====
  
 
New build procedure for JBrowse pays off.
 
New build procedure for JBrowse pays off.

Latest revision as of 17:04, 11 May 2020

Agenda

Note that there is a copy of this page at WBConfCall_2020.05.07-Agenda_and_Minutes (which is the date that the meeting actually occurred).

Staff changes at Hinxton

Welcom Mark QT!

Model changes for WS278

Disease data handling

Ranjana proposed for WS278

wiki here: https://wiki.wormbase.org/index.php/Model_changes_to_capture_and_consolidate_human_disease_data

Model has been incorporated: commit https://github.com/WormBase/wormbase-pipeline/commit/7b744319bd507b527d893f25e6a6dd5ac1766e9b

Context: https://github.com/WormBase/wormbase-pipeline/blame/master/wspec/models.wrm

I had to add a Disease_modifier_gene ?Gene XREF Modifies_disease tag as missed a note on the wiki.

Could you check the model again Ranjana.

ECO code data model

Kimberly proposed for WS278

Wiki here: https://wiki.wormbase.org/index.php/Evidence_Code_Ontology

Ranjana had an additional Disease tag for this:

Evidence_code ECO_term ?ECO_term //new tag
             GO_code ?GO_code   //old tag, but add “GO_code” in front of ?GO_code

Model has been incorporated: commit:https://github.com/WormBase/wormbase-pipeline/commit/b8e089f4ba148a2f006451c74b15ee0083304d48

Context: https://github.com/WormBase/wormbase-pipeline/blame/master/wspec/models.wrm

WS278 build schedule

Suggestion: be up front on twitter, website and wiki and follow the more flexible schedule.

Set up a slack channel to discuss this #build268.

  • HX preference would be to push the WS278 release schedule back by 2 weeks

Adjusted Schedule to what was posted in the slack channel:

29th May - Models freeze
19th June - Upload
22nd June-17th July - ACeDB production
20th-24th July - Datomic migration
24th July End Hinxton release and final handover to OICR

originally:

15th May - Models freeze
5th June - Upload
8th June-3rd July - ACeDB production      <!!!!!!EBI Farm move 22nd June - 3rd July!!!!!!!>
6th-10th July - Datomic migration
10th July End Hinxton release and final handover to OICR

Outstanding issues

#7663 Homology group Overview Widget Paul Davis commented and reassigned to Michael P. who has also commented.

#7637 Making retractions more visible Kimberly Van Auken already commented.

Nice note about one recently closed issue

New build procedure for JBrowse pays off.