WBConfCall 2020.04.16-Agenda and Minutes

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Agenda and Minutes

Reproducing or reworking the "protein schematic" in protein pages

As we winnow down the number of items at WormBase.org that directly depend on ACEDB (and there are very few left), we have the graphic generated for protein homology like in the UNC-26, isoform a page While we can reproduce that image with JBrowse like this, it does require jumping through some hoops. So the question is, do we keep this functionality and jump through those hoops, or should we rework it to be more useful, or do we pitch it altogether?

Calculating potential interologs based on Alliance orthology

=Predicted Protein-Protein interactions from multiple species' orthology data in AGR =Need to do minor model change for WS277 or WS278

GO-CAM model/pathway curation with orthology data

Help-desk issue

  1. Looking for AVB-specific promoter of C. Elegans (github #7667)
    1. https://github.com/WormBase/website/issues/7667
  2. FTP site search for basement membrane related genes/proteins
  3. REST API issues
    1. https://github.com/WormBase/website/issues/7666