Difference between revisions of "WBConfCall 2020.04.02-Agenda and Minutes"
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* Other models use ?GO_code - do we want to switch them to ?ECO_code at some point as well? | * Other models use ?GO_code - do we want to switch them to ?ECO_code at some point as well? | ||
− | == GitHub Tickets == | + | === GitHub Tickets === |
− | * where can i find the upstream and downstream limits for a gene? #7651 and #7652. College assignment | + | * where can i find the upstream and downstream limits for a gene? [https://github.com/WormBase/website/issues/7651 #7651] #7651 and [https://github.com/WormBase/website/issues/7652 #7652] #7652. College assignment |
+ | * [https://github.com/WormBase/website/issues/7579 Maureen Barr's question about protein coding genes with known function]; can this be closed? |
Revision as of 13:58, 2 April 2020
Contents
Agenda and Minutes
Adding strain genotype information
- Having strains with only an ID is not useful, without the genotype
- Easy to add the genotype information when a curator is reading the paper, and to do it at the same time as request for the ID
- Not efficient to have to e-mail and then wait for this to be added
Evidence and Conclusion Ontology in WB
- In preparation for the new GO file formats, GPAD/GPI 2.0, we'll need to incorporate the Evidence and Conclusion Ontology (ECO) into WB
- Working on a model for ECO in WB
- This would replace ?GO_code in the ?GO_annotation model
- Other models use ?GO_code - do we want to switch them to ?ECO_code at some point as well?
GitHub Tickets
- where can i find the upstream and downstream limits for a gene? #7651 #7651 and #7652 #7652. College assignment
- Maureen Barr's question about protein coding genes with known function; can this be closed?