Difference between revisions of "WBConfCall 2020.03.05-Agenda and Minutes"

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* From thread on Slack, "general" channel
* From thread on Slack, "general" channel
* Karen asked about getting WB IDs for rearrangements (they currently do not get serial IDs)
* Karen asked about getting WB IDs for rearrangements (they currently do not get serial IDs)
* Todd suggested rolling them into the WBVariation class
* Rearrangement class model doc https://docs.google.com/document/d/1Zntv3UA30dYxyf0MLKgZnThlFMPdTJ_wOokD06vdxss/edit?usp=sharing
== Nameserver-to-Caltech info transmission ==
== Nameserver-to-Caltech info transmission ==

Revision as of 12:08, 4 March 2020


Help Desk

  • Has anyone replied to Padhu Padmanabhan (email Feb 4)?
    • Asked about indicating Y53C10A.5 as having plasmanylethanolamine delta-1-desaturase (EC activity
    • Could this be added as a GO MF (GO:0050207)?
    • Has anyone replied to Montserrat Elías regarding naming of same gene, Y53C10A.5?

Rearrangement IDs

Nameserver-to-Caltech info transmission

  • Caltech curators would like quick turn around when requesting names/IDs
  • Currently relies on a nightly cronjob to dump GeneACE to Caltech Postgres database
  • Caltech can create a local CGI to immediately update Postgres/OA with new terms before nightly dump occurs
  • Is there an effective mechanism to make updates to Caltech Postgres/OA as immediately as possible?

Disease info changes in 6 classes

  • I propose making these changes for WS278, gives us more time to revisit/change dumpers, and test the data here at Caltech (Ranjana)
  • If we want to go ahead with the new ?Genotype class, that's separate and I'm fine with that (Ranjana)

Single cell expression tool

  • Eduardo is looking for feedback on his tool to query C. elegans single cell expression
  • Tool is here: http://de.wormcells.com/