Difference between revisions of "WBConfCall 2018.05.17-Agenda and Minutes"

From WormBaseWiki
Jump to navigationJump to search
Line 40: Line 40:
 
**Chris, Daniela, Karen, Ranjana
 
**Chris, Daniela, Karen, Ranjana
 
*Discussed institutional vs personal sign-on; personal is better, allows for assignment of WBPerson IDs
 
*Discussed institutional vs personal sign-on; personal is better, allows for assignment of WBPerson IDs
 +
*What additional information will be solicited when requesting a new strain ID?
 +
**Public name is most important
 +
**Reference?
 +
**Genotype?
 +
**This really is an issue of what gets curated where.
 +
**Ideally, we'd have a central curation database (just saying) that would allow immediate entry of the data.

Revision as of 15:52, 17 May 2018

Agenda

HelpDesk - Kimberly

Helpdesk Issues Still Open

WBStrain ids

  • would be good to get a list of people who need to be able to create new strains
  • will reside temporary in the old NameServer at Sanger and then move to the new Datomic one on AWS

SAB - Toronto, CA

AGR

Minutes

  • On call: Adam, Cecilia, Chris, Daniela, Juancarlos, Karen, Kimberly, Raymond, Scott, Sibyl, Todd, Valerio, Wen, Kevin, Paul D, Gary, Matt, Paul K

HelpDesk - Kimberly

Helpdesk Issues Still Open

  • I am trying to have access to fosmid ...
    • On staging, we will begin providing the end sequences
    • We've never had the full sequence, so if we were providing a "fosmid" sequence, it might have been the intervening genomic sequence
    • What would users want?
    • It seems we could provide the intervening sequence but we need to communicate with users about what they're actually getting, i.e. a prediction.
    • Would this be a potential source of confusion to users, though, who may need to validate the sequence against a clone they order from Don Moerman's group?
    • Resolution: for next release, provide intervening genomic sequence but make it clear that it's predicted from genomic.
    • Chris will check and close the original ticket, if the changes Adam pushed are okay.

WBStrainIDs

  • Bulk assigning strain IDs to existing strains is easy.
  • How do we assign new strain IDs at the point of curation?
  • Will treat similarly to variations, i.e. use a name service to check if an ID already exists; if not, can request a new strain ID to use in postgres curation database.
  • Who needs access to the name server for this?
    • Chris, Daniela, Karen, Ranjana
  • Discussed institutional vs personal sign-on; personal is better, allows for assignment of WBPerson IDs
  • What additional information will be solicited when requesting a new strain ID?
    • Public name is most important
    • Reference?
    • Genotype?
    • This really is an issue of what gets curated where.
    • Ideally, we'd have a central curation database (just saying) that would allow immediate entry of the data.