Difference between revisions of "WBConfCall 2018.04.19-Agenda and Minutes"

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1. WS266 schedule
 
1. WS266 schedule
 +
* Proposed upload date - 18th May
  
2. SAB 2018/Project Meeting
+
2. Loading additional ontologies
*Are the dates July 12/13 confirmed?
+
* On the models list, we agreed to import the Relation Ontology (RO), which is needed for GO annotation, and could also be used elsewhere
 +
* Are there other ontologies we should import? e.g. ECO?
  
3. Moving to genotype as a class in WB
+
3. SAB 2018/Project Meeting
*We need genotype as a class
+
*Assuming July 12/13 now confirmed
*How do we do this-can a genotype be issued as and when needed for curation?
+
* Travel plans
 +
** Hinxton will be flying in Weds night, and will be around for the whole of Thu/Fri (flying back at some point over the weekend)
 +
 
 +
4. Genotype class?
  
 
==Minutes==
 
==Minutes==
 +
1. Biological Ontologies Meeting (ICBO) at Oregon in August
 +
* Raymond, Gary, Chris interested in going (to join phenotype ontology developers meeting at beginning)
 +
* Would contribute to phenotype ontology workshop
 +
 +
2. WS266 upload
 +
* Files are due May 15th to citace
 +
*Tomorrow is the last day to propose changes to models
 +
*Models will be released next week
 +
 +
3. Importing Ontologies into WormBase
 +
*Will hold off till WS267 to import RO and ECO
 +
*Will give us more time to think about all the models that may need changing
 +
*Currently some curators using GO codes, GO codes could be automatically mapped to ECO codes
 +
 +
4. Project meeting and SAB 2018
 +
*Thursday all day: project meeting, site presentations
 +
*Thursday night dinner
 +
*Friday morning-presentations  Afternoon-SAB feedback 
 +
*Friday night dinner
 +
 +
Topics for discussion:
 +
*Path to transition to Alliance and potential problems
 +
*Focus on plans and priorities--curation priorities
 +
 +
Travel arrangements:
 +
*Sibyl will send the accomodation code
 +
*Caltech people: contact Sarah for travel arrangements
 +
 +
5. Genotype class
 +
*Many MODs curate to the Genotype
 +
*There is a practical use of introducing the Genotype class--sometimes authors do not give the names of strains, can represent the entire genetic entity that is the model for disease and/or exhibits the phenotype
 +
*Name server will handle the Genotype creating and issuing
 +
*Name server is being rewritten so will be easier to use
 +
*OA will be able to access the name server

Latest revision as of 17:05, 19 April 2018

Agenda

1. WS266 schedule

  • Proposed upload date - 18th May

2. Loading additional ontologies

  • On the models list, we agreed to import the Relation Ontology (RO), which is needed for GO annotation, and could also be used elsewhere
  • Are there other ontologies we should import? e.g. ECO?

3. SAB 2018/Project Meeting

  • Assuming July 12/13 now confirmed
  • Travel plans
    • Hinxton will be flying in Weds night, and will be around for the whole of Thu/Fri (flying back at some point over the weekend)

4. Genotype class?

Minutes

1. Biological Ontologies Meeting (ICBO) at Oregon in August

  • Raymond, Gary, Chris interested in going (to join phenotype ontology developers meeting at beginning)
  • Would contribute to phenotype ontology workshop

2. WS266 upload

  • Files are due May 15th to citace
  • Tomorrow is the last day to propose changes to models
  • Models will be released next week

3. Importing Ontologies into WormBase

  • Will hold off till WS267 to import RO and ECO
  • Will give us more time to think about all the models that may need changing
  • Currently some curators using GO codes, GO codes could be automatically mapped to ECO codes

4. Project meeting and SAB 2018

  • Thursday all day: project meeting, site presentations
  • Thursday night dinner
  • Friday morning-presentations Afternoon-SAB feedback
  • Friday night dinner

Topics for discussion:

  • Path to transition to Alliance and potential problems
  • Focus on plans and priorities--curation priorities

Travel arrangements:

  • Sibyl will send the accomodation code
  • Caltech people: contact Sarah for travel arrangements

5. Genotype class

  • Many MODs curate to the Genotype
  • There is a practical use of introducing the Genotype class--sometimes authors do not give the names of strains, can represent the entire genetic entity that is the model for disease and/or exhibits the phenotype
  • Name server will handle the Genotype creating and issuing
  • Name server is being rewritten so will be easier to use
  • OA will be able to access the name server