Difference between revisions of "WBConfCall 2018.03.15-Agenda and Minutes"
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==Importing Undiagnosed Diseases Network (UDN) worm data into WormBase== | ==Importing Undiagnosed Diseases Network (UDN) worm data into WormBase== | ||
* PI in contact: Andy Golden; This is pre-publication data, but my understanding is that we are taking this in, so this is one of the exceptions | * PI in contact: Andy Golden; This is pre-publication data, but my understanding is that we are taking this in, so this is one of the exceptions | ||
| − | *Initially thought it would be textual data that would go into disease model curation, but really involves other data types such as Variation, Strain, Phenotype, | + | *Initially thought it would be textual data that would go into disease model curation, but really involves other data types such as Variation, Strain, Phenotype, Protein amino acid sequence changes, etc. |
* Example, for amino acid sequence change (from Kevin): include the UniProt protein entry that they used, and track this forward with future versions of the assembly and gene set | * Example, for amino acid sequence change (from Kevin): include the UniProt protein entry that they used, and track this forward with future versions of the assembly and gene set | ||
*So looks like we want to integrate the data across these datatypes, in a more organic way, not just textual information, so we will need to co-ordinate between the different data curators | *So looks like we want to integrate the data across these datatypes, in a more organic way, not just textual information, so we will need to co-ordinate between the different data curators | ||
*When the data is eventually published we will need to make sure everything matches up (something that Chris G. was concerned about) | *When the data is eventually published we will need to make sure everything matches up (something that Chris G. was concerned about) | ||
Revision as of 22:15, 14 March 2018
Agenda
Importing Undiagnosed Diseases Network (UDN) worm data into WormBase
- PI in contact: Andy Golden; This is pre-publication data, but my understanding is that we are taking this in, so this is one of the exceptions
- Initially thought it would be textual data that would go into disease model curation, but really involves other data types such as Variation, Strain, Phenotype, Protein amino acid sequence changes, etc.
- Example, for amino acid sequence change (from Kevin): include the UniProt protein entry that they used, and track this forward with future versions of the assembly and gene set
- So looks like we want to integrate the data across these datatypes, in a more organic way, not just textual information, so we will need to co-ordinate between the different data curators
- When the data is eventually published we will need to make sure everything matches up (something that Chris G. was concerned about)
