Difference between revisions of "WBConfCall 2017.01.05-Agenda and Minutes"

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= Agenda & Minutes =
 
= Agenda & Minutes =
 +
 +
''Minutes inline in each section''
  
 
== WormBase how-to articles ==
 
== WormBase how-to articles ==
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*** I'm happy to - with help from my colleagues. Mary Ann
 
*** I'm happy to - with help from my colleagues. Mary Ann
 
** Can we somehow leverage the work done on the WormBook chapters?
 
** Can we somehow leverage the work done on the WormBook chapters?
 +
 +
=== Minutes ===
 +
Mary Ann and Chris will write the main WB one.
 +
Leveraging the work done on WormBook Chapters:
 +
  * '''Please state what was agreed (!)''' (''missed this due to noise on call and confusion'')
  
 
== Global identifiers / RRID ==
 
== Global identifiers / RRID ==
 +
(No text)
 +
 +
=== Minutes ===
 +
Paul Davis (PAD) detailed that:
 +
* he'd been in communication with Aric and talked about confusion with the syntax, sought clarification
 +
* Hinxton are already providing data dumps for RRI to pick up
 +
Raymond asked PAD for insight on how RRIDs are being used, Paul D replied:
 +
* Searching for Elegans strains, summarises data provided by source(s) (eg: CGC?)
 +
* Portal provides links back to resource (e.g: WormBase)
  
 +
PAD will be having a call with RRI next week. 
  
== Help Desk ==
+
Kevin queried the e-mail thread where Karen raised objection to the RRID scheme.
 +
 
 +
Karen explained the rationale for objections; group discussed at length.
 +
Main points were:
 +
  * Organisation behind RRID is commercial, questioned if RRID is in WB's best interests
 +
  * Inclusion of "data class" in the identifier
 +
 
 +
This may be brought up on a future AGR call.
 +
 
 +
== Biocurator Conference ==
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* Stanford University, March 26-29, 2017 http://med.stanford.edu/biocuration.html
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* Deadline for abstract submission for talk or poster is January 13, 2017
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** should we submit a talk? Mary Ann
 +
 
 +
=== Minutes ===
 +
Please see [[WormBase-Caltech_Weekly_Calls]]
  
  
* [https://github.com/WormBase/website/issues/5336 #5336] Querying genes
+
== Help Desk ==
  No one has replied yet.
 
  
 
* [https://github.com/WormBase/website/issues/5255 #5255] Tree display of CB4856 strain.
 
* [https://github.com/WormBase/website/issues/5255 #5255] Tree display of CB4856 strain.
 
   Perhaps warrants further discussion; still issues on the live site.
 
   Perhaps warrants further discussion; still issues on the live site.
 +
  Question posited previously: Should we keep the Tree Display feature?
 +
 +
* Request from Iskra Katic to add Basel Worm Meeting on March 16th, 2017, in Basel, Switzerland to website
 +
  (email only, no github ticket)
 +
 +
=== Minutes ===
 +
 +
Tree Display - please see git hub [https://github.com/WormBase/website/issues/5255 ticket].
 +
 +
Todd will action the request from Iskra Katic.

Latest revision as of 11:50, 6 January 2017

Agenda & Minutes

Minutes inline in each section

WormBase how-to articles

  • We have agreed to submit a how-to articles for WormBase and ParaSite for Methods in Molecular Biology
    • Hinxton will write the ParasSite one. Anyone want to lead the writing of the main WB one?
      • I'm happy to - with help from my colleagues. Mary Ann
    • Can we somehow leverage the work done on the WormBook chapters?

Minutes

Mary Ann and Chris will write the main WB one. Leveraging the work done on WormBook Chapters:

 * Please state what was agreed (!) (missed this due to noise on call and confusion) 

Global identifiers / RRID

(No text)

Minutes

Paul Davis (PAD) detailed that:

* he'd been in communication with Aric and talked about confusion with the syntax, sought clarification
* Hinxton are already providing data dumps for RRI to pick up

Raymond asked PAD for insight on how RRIDs are being used, Paul D replied:

* Searching for Elegans strains, summarises data provided by source(s) (eg: CGC?)
* Portal provides links back to resource (e.g: WormBase)

PAD will be having a call with RRI next week.

Kevin queried the e-mail thread where Karen raised objection to the RRID scheme.

Karen explained the rationale for objections; group discussed at length. Main points were:

 * Organisation behind RRID is commercial, questioned if RRID is in WB's best interests 
 * Inclusion of "data class" in the identifier

This may be brought up on a future AGR call.

Biocurator Conference

Minutes

Please see WormBase-Caltech_Weekly_Calls


Help Desk

  • #5255 Tree display of CB4856 strain.
 Perhaps warrants further discussion; still issues on the live site.
 Question posited previously: Should we keep the Tree Display feature?
  • Request from Iskra Katic to add Basel Worm Meeting on March 16th, 2017, in Basel, Switzerland to website
 (email only, no github ticket)

Minutes

Tree Display - please see git hub ticket.

Todd will action the request from Iskra Katic.