Difference between revisions of "WBConfCall 2017-11-16-Agenda and Minutes"

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** Chris - Can we use the models mailing list ?
 
** Chris - Can we use the models mailing list ?
 
** Todd - github should post to slack, maybe have discussion there.
 
** Todd - github should post to slack, maybe have discussion there.
** Raymond - Caltech doesn't use slack much, prefers email.
+
** Raymond - Caltech doesn't use slack much, prefers email. Can we do email ?
 +
** Todd - Will look into it.
 +
** Raymond - If that doesn't work, can we centralize into a single place to subscribe to.

Revision as of 16:49, 16 November 2017

Agenda

Outstanding Help Desk

  • https://github.com/WormBase/website/issues/5977
    • Submitted 2 assembled genomes + annotations to NCBI (C. latens/PX534 and C.remanei/PX439
    • would like to add the 2 new assemblies to WormBase and update the C.remanei/PX356 assembly & annotation to the new set.

Minutes

  • Orthology. Something about PantherDB.
    • Chris / Jae - Sequence similarity calls, and orthology calls by other methods. Can we take all things into account when displaying orthologs in AGR or WormBase.
    • Michael P - We show all connections.
    • Raymond - Not about automated predictions, about manual connections of functional homologs, not picked up by automated mechanisms.
    • Paul S - Functional data is not orthology.
  • Chris - AGR working on help desk pipeline.
  • Raymond - Caltech scrambling for model changes recently. There was discussion on github, but Caltech didn't know, how does Caltech subscribe to these discussions ?
    • Matt R - Started like a simple issue, but grew more complicated.
    • Chris - Can we use the models mailing list ?
    • Todd - github should post to slack, maybe have discussion there.
    • Raymond - Caltech doesn't use slack much, prefers email. Can we do email ?
    • Todd - Will look into it.
    • Raymond - If that doesn't work, can we centralize into a single place to subscribe to.