Difference between revisions of "WBConfCall 2017-11-16-Agenda and Minutes"

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== Minutes ==
 
== Minutes ==
  
=== Issue 1 ===
+
* Orthology.  Something about PantherDB.
 +
** Chris / Jae - Sequence similarity calls, and orthology calls by other methods.  Can we take all things into account when displaying orthologs in AGR or WormBase.
 +
** Michael P - We show all connections.
 +
** Raymond - Not about automated predictions, about manual connections of functional homologs, not picked up by automated mechanisms.
 +
** Paul S - Functional data is not orthology.
 +
 
 +
* Chris - AGR working on help desk pipeline.
 +
 
 +
* Raymond - Caltech scrambling for model changes recently.  There was discussion on github, but Caltech didn't know, how does Caltech subscribe to these discussions ?

Revision as of 16:46, 16 November 2017

Agenda

Outstanding Help Desk

  • https://github.com/WormBase/website/issues/5977
    • Submitted 2 assembled genomes + annotations to NCBI (C. latens/PX534 and C.remanei/PX439
    • would like to add the 2 new assemblies to WormBase and update the C.remanei/PX356 assembly & annotation to the new set.

Minutes

  • Orthology. Something about PantherDB.
    • Chris / Jae - Sequence similarity calls, and orthology calls by other methods. Can we take all things into account when displaying orthologs in AGR or WormBase.
    • Michael P - We show all connections.
    • Raymond - Not about automated predictions, about manual connections of functional homologs, not picked up by automated mechanisms.
    • Paul S - Functional data is not orthology.
  • Chris - AGR working on help desk pipeline.
  • Raymond - Caltech scrambling for model changes recently. There was discussion on github, but Caltech didn't know, how does Caltech subscribe to these discussions ?