Difference between revisions of "WBConfCall 2017-09-21-Agenda and Minutes"

From WormBaseWiki
Jump to navigationJump to search
(Created page with " = Agenda and Minutes= == Grant renewal update == == AOB == = Minutes =")
 
 
Line 8: Line 8:
  
 
= Minutes =
 
= Minutes =
 +
 +
* Grant
 +
** On track. Will be pulled of Gdocs today to format, references etc.
 +
** People generally positive about the treatment of AGR
 +
** People also felt that the app shows sufficient innovation
 +
 +
* modENCODE tracks
 +
** Some of the modENCODE tracks mapped to wrong assembly and potentially superseded by new data
 +
** Proposal: create a JBrowse on the old assembly, and put the old modENCODE tracks there
 +
*** Survey people to find out if anyone actually uses these tracks
 +
 +
* Regulatory features
 +
** Issue one: TF binding site features are not associated with genes
 +
** Issue two: they have opaque WBsf ids
 +
** Proposal: implement a method to associated TF binding site features with genes and give them human-readable names
 +
*** Names possibly based on genes either side of the feature
 +
** Chris will push forward with this an bring others in where appropriate

Latest revision as of 17:02, 21 September 2017

Agenda and Minutes

Grant renewal update

AOB

Minutes

  • Grant
    • On track. Will be pulled of Gdocs today to format, references etc.
    • People generally positive about the treatment of AGR
    • People also felt that the app shows sufficient innovation
  • modENCODE tracks
    • Some of the modENCODE tracks mapped to wrong assembly and potentially superseded by new data
    • Proposal: create a JBrowse on the old assembly, and put the old modENCODE tracks there
      • Survey people to find out if anyone actually uses these tracks
  • Regulatory features
    • Issue one: TF binding site features are not associated with genes
    • Issue two: they have opaque WBsf ids
    • Proposal: implement a method to associated TF binding site features with genes and give them human-readable names
      • Names possibly based on genes either side of the feature
    • Chris will push forward with this an bring others in where appropriate