Difference between revisions of "WBConfCall 2016.06.02-Agenda and Minutes"

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= Agenda =
 
= Agenda =
 +
Chair: Gary Williams
 +
 
== WS255 models ==
 
== WS255 models ==
 +
 +
Freeze date 10th June
 +
 +
Proposals so far:
 +
 +
=== Chris ===
 +
Additional level of data capture within the Interaction model for Physical Interactions.
 +
 +
?Interaction
 +
    Interaction_type Physical Protein_protein
 +
                              Protein_DNA
 +
                              Protein_RNA
 +
 +
=== Mary Ann ===
 +
Variation, additional Production_method.
 +
 +
Origin Production_method MosDEL
 +
 +
== Open Issues ==
 +
* [https://github.com/WormBase/website/issues/4856 GBrowse mouseover]
  
 
= Minutes =
 
= Minutes =
 +
 +
== Model Changes ==
 +
 +
* Paul described the model changes - these are both simple.
 +
* There were no problems found with these.
 +
 +
=== Variations in Human and Worm ===
 +
 +
* Ranjana said that Tim Schedl has asked about the status of modelling the same variation in Human and Worm.
 +
* Kevin is working on this in conjunction with Sibyl who is developing a viewer.
 +
* Karen raised the possibility of manual curation being required. This would require further model changes and would be a large task.
 +
* It was felt that further discussion of this should wait until Kevin is back.
 +
* Sibyl said that she would share her work on the viewer with anyone who wanted to see what it looks like.
 +
 +
=== WS253 ===
 +
 +
* Raymond wanted to know when this would go live because he has already updated the Ontology Browser.
 +
* Todd said that is was delayed by a few days.
 +
 +
=== Datomic ===
 +
 +
* Chris is interested in doing some Datomic queries to learn more about it. He wanted to know if there was an equivalent of the ACE models file.
 +
* There is an annotated Models file and a lisp-like file giving details of the tag-names etc. Matt will share the URL for these on the staff mailing list.
 +
 +
 +
=== Simple Mine ===
 +
 +
* Raymond asked if anyone had objections to a simple gene data mining tool.
 +
* Nobody objected.
 +
* This will be based on [http://tazendra.caltech.edu/~azurebrd/cgi-bin/forms/simplemine.cgi FraqMine].
 +
* Raymond will start a GitHub ticket for people to discuss this project.
 +
 +
=== TAGC meeting ===
 +
 +
* Todd wanted to know how large the book of the meeting was.
 +
* It is at least 22 pages - could be more, but less than 30.

Latest revision as of 17:41, 2 June 2016

Agenda

Chair: Gary Williams

WS255 models

Freeze date 10th June

Proposals so far:

Chris

Additional level of data capture within the Interaction model for Physical Interactions.

?Interaction
    Interaction_type Physical Protein_protein
                              Protein_DNA
                              Protein_RNA

Mary Ann

Variation, additional Production_method.

Origin Production_method MosDEL

Open Issues

Minutes

Model Changes

  • Paul described the model changes - these are both simple.
  • There were no problems found with these.

Variations in Human and Worm

  • Ranjana said that Tim Schedl has asked about the status of modelling the same variation in Human and Worm.
  • Kevin is working on this in conjunction with Sibyl who is developing a viewer.
  • Karen raised the possibility of manual curation being required. This would require further model changes and would be a large task.
  • It was felt that further discussion of this should wait until Kevin is back.
  • Sibyl said that she would share her work on the viewer with anyone who wanted to see what it looks like.

WS253

  • Raymond wanted to know when this would go live because he has already updated the Ontology Browser.
  • Todd said that is was delayed by a few days.

Datomic

  • Chris is interested in doing some Datomic queries to learn more about it. He wanted to know if there was an equivalent of the ACE models file.
  • There is an annotated Models file and a lisp-like file giving details of the tag-names etc. Matt will share the URL for these on the staff mailing list.


Simple Mine

  • Raymond asked if anyone had objections to a simple gene data mining tool.
  • Nobody objected.
  • This will be based on FraqMine.
  • Raymond will start a GitHub ticket for people to discuss this project.

TAGC meeting

  • Todd wanted to know how large the book of the meeting was.
  • It is at least 22 pages - could be more, but less than 30.