WBConfCall 2015.11.05-Agenda and Minutes

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Agenda

  • WS252 models deadline
  • SObA phenotype graph re-worked using cytoscape.js
  • Generating lists of transcription factor target genes

Minutes

  • SObA (Summary of Ontology-based Annotation) graph for phenotype: examples
daf-3 <http://131.215.12.204/~azurebrd/cgi-bin/amigo.cgi?action=annotSummaryCytoscape&focusTermId=WBGene00000899>
daf-2 <http://131.215.12.204/~azurebrd/cgi-bin/amigo.cgi?action=annotSummaryCytoscape&focusTermId=WBGene00000898>

Re-worked from an earlier version which was based on Graphviz. It is to be made into a widget on Gene pages, immediately below the Phenotypes widget, providing a summarized view of a gene's annotated phenotypes in an ontology-aware manner.

WS252

  • 5 model changes
  • Paul will use GitHub to commit edits to the models.wrm
  • Molecule model (Karen)
  • Expression pattern, for managing RNA-seq data (Daniela)
  • Housekeeping: Last reviewed CDS,transcript (Gary W)
  • Housekeeping: Add UNIQUE tag to transcript to gene, 1 gene per CDS
  • Pathogen tag in #Phenotype_info
  • Models freeze by Friday 13th

WS252 Upload end of first week of December (4th) WS252 build: due at end of first week in January (8th) Release schedule updated

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