Difference between revisions of "WBConfCall 2015.11.05-Agenda and Minutes"
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Revision as of 16:51, 5 November 2015
Agenda
- WS252 models deadline
- SObA phenotype graph re-worked using cytoscape.js
- Generating lists of transcription factor target genes
Minutes
- SObA (Summary of Ontology-based Annotation) graph for phenotype: examples
daf-3 <http://131.215.12.204/~azurebrd/cgi-bin/amigo.cgi?action=annotSummaryCytoscape&focusTermId=WBGene00000899> daf-2 <http://131.215.12.204/~azurebrd/cgi-bin/amigo.cgi?action=annotSummaryCytoscape&focusTermId=WBGene00000898>
Re-worked from an earlier version which was based on Graphviz. It is to be made into a widget on Gene pages, immediately below the Phenotypes widget, providing a summarized view of a gene's annotated phenotypes in an ontology-aware manner.
WS252
- 5 model changes
- Paul will use GitHub to commit edits to the models.wrm
- Molecule model (Karen)
- Expression pattern, for managing RNA-seq data (Daniela)
- Housekeeping: Last reviewed CDS,transcript (Gary W)
- Housekeeping: Add UNIQUE tag to transcript to gene, 1 gene per CDS
- Pathogen tag in #Phenotype_info
- Models freeze by Friday 13th
WS252 build
- Upload end of first week of December (4th)
- WS252 build: due at end of first week in January (8th)
- Release schedule updated
