Difference between revisions of "WBConfCall 2015.11.05-Agenda and Minutes"

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* WS252 models deadline
 
* WS252 models deadline
 
* SObA phenotype graph re-worked using cytoscape.js
 
* SObA phenotype graph re-worked using cytoscape.js
 +
* Generating lists of transcription factor target genes
  
 
= Minutes =
 
= Minutes =

Revision as of 16:19, 5 November 2015

Agenda

  • WS252 models deadline
  • SObA phenotype graph re-worked using cytoscape.js
  • Generating lists of transcription factor target genes

Minutes

  • SObA (Summary of Ontology-based Annotation) graph for phenotype: examples
daf-3 <http://131.215.12.204/~azurebrd/cgi-bin/amigo.cgi?action=annotSummaryCytoscape&focusTermId=WBGene00000899>
daf-2 <http://131.215.12.204/~azurebrd/cgi-bin/amigo.cgi?action=annotSummaryCytoscape&focusTermId=WBGene00000898>

Re-worked from an earlier version which was based on Graphviz. It is to be made into a widget on Gene pages, immediately below the Phenotypes widget, providing a summarized view of a gene's annotated phenotypes in an ontology-aware manner.