WBConfCall 2015.09.03-Agenda and Minutes

Minutes

Datomic Progress

Paul: Gary: porting, perl scripts for querying datomic Juancarlos: finished working through documentation Adam:

• Method for provisioning machines with Datomic, website, etc.
• Using Docker to be able to quickly deploy going forward.
• Makes future development much easier, good error reporting

Genetomic / curation database

• close to be ready to production, but not quite ready

WormMethods chapters PWS: getting some reviews back

Models

• PD: Deadline for proposals is next week

PATO

• RL: Do we need to extend the model to accommodate the ontology? Is there a name class?
• CG: Cost for creating a new class?
• TD: already bringing in .obo files from other ontologies
• Discussion about whether or not we will show the data on the website
• CG: will create a new class for PATO
• -- discussion about who handles obo->ace files: individual curators.

• DR: Hold off on changes for micropublication (?Expression_patt)

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> DISCONNECTED <------ sorry

Expression_cluster Human_disease (Xiaodong) GO_term (addition to ?Paper)

Raymond: should we go through a two tier process for models?

• 1. Review process
• 2. Put it into the models file

PD: discussion typically occurs before the proposal hits the model list? RL: Caltech is dispersed and the expertise is deluded.

WC: How do model changes work for Datomic?

PD:

TH: So do we want to formalize/enhance the model proposal process?

PD: Will come up with a working document.

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Intermine: SG: Webapp is running and still a few small issues

GBrowse/JBrowse

• SC:

WS250

• Promoting JBrowse