Difference between revisions of "WBConfCall 2015.09.03-Agenda and Minutes"

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(Created page with "= Agenda = == 1 == == 2 == =Minutes= == 1 == == 2 ==")
 
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=Minutes=
 
=Minutes=
  
== 1 ==
+
== Datomic Progress ==
  
 +
Paul:
 +
Gary: porting, perl scripts for querying datomic
 +
Juancarlos: finished working through documentation
 +
Adam:
 +
* Method for provisioning machines with Datomic, website, etc.
 +
* Using Docker to be able to quickly deploy going forward.
 +
* Makes future development much easier, good error reporting
  
== 2 ==
+
Genetomic / curation database
 +
* close to be ready to production, but not quite ready
 +
 
 +
 
 +
WormMethods chapters
 +
PWS: getting some reviews back
 +
 
 +
=== Models ===
 +
* PD: Deadline for proposals is next week
 +
 
 +
PATO
 +
* RL: Do we need to extend the model to accommodate the ontology? Is there a name class?
 +
* CG: Cost for creating a new class?
 +
* TD: already bringing in .obo files from other ontologies
 +
* Discussion about whether or not we will show the data on the website
 +
* CG: will create a new class for PATO
 +
* -- discussion about who handles obo->ace files: individual curators.
 +
 
 +
* DR: Hold off on changes for micropublication (?Expression_patt)
 +
 
 +
------> DISCONNECTED <------ sorry
 +
 
 +
 
 +
Expression_cluster
 +
Human_disease (Xiaodong)
 +
GO_term (addition to ?Paper)
 +
 
 +
Raymond: should we go through a two tier process for models?
 +
* 1. Review process
 +
* 2. Put it into the models file
 +
 
 +
PD: discussion typically occurs before the proposal hits the model list?
 +
RL: Caltech is dispersed and the expertise is deluded.
 +
 
 +
WC: How do model changes work for Datomic?
 +
 
 +
PD:
 +
 
 +
TH: So do we want to formalize/enhance the model proposal process?
 +
 
 +
PD: Will come up with a working document.
 +
 
 +
--
 +
 
 +
Intermine:
 +
SG: Webapp is running and still a few small issues
 +
 
 +
 
 +
GBrowse/JBrowse
 +
* SC:
 +
 
 +
WS250
 +
* Promoting JBrowse

Revision as of 17:53, 3 September 2015

Agenda

1

2

Minutes

Datomic Progress

Paul: Gary: porting, perl scripts for querying datomic Juancarlos: finished working through documentation Adam:

  • Method for provisioning machines with Datomic, website, etc.
  • Using Docker to be able to quickly deploy going forward.
  • Makes future development much easier, good error reporting

Genetomic / curation database

  • close to be ready to production, but not quite ready


WormMethods chapters PWS: getting some reviews back

Models

  • PD: Deadline for proposals is next week

PATO

  • RL: Do we need to extend the model to accommodate the ontology? Is there a name class?
  • CG: Cost for creating a new class?
  • TD: already bringing in .obo files from other ontologies
  • Discussion about whether or not we will show the data on the website
  • CG: will create a new class for PATO
  • -- discussion about who handles obo->ace files: individual curators.
  • DR: Hold off on changes for micropublication (?Expression_patt)

> DISCONNECTED <------ sorry


Expression_cluster Human_disease (Xiaodong) GO_term (addition to ?Paper)

Raymond: should we go through a two tier process for models?

  • 1. Review process
  • 2. Put it into the models file

PD: discussion typically occurs before the proposal hits the model list? RL: Caltech is dispersed and the expertise is deluded.

WC: How do model changes work for Datomic?

PD:

TH: So do we want to formalize/enhance the model proposal process?

PD: Will come up with a working document.

--

Intermine: SG: Webapp is running and still a few small issues


GBrowse/JBrowse

  • SC:

WS250

  • Promoting JBrowse