Difference between revisions of "WBConfCall 2015.09.03-Agenda and Minutes"

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(Created page with "= Agenda = == 1 == == 2 == =Minutes= == 1 == == 2 ==")
 
 
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=Minutes=
 
=Minutes=
  
== 1 ==
+
== Datomic Progress ==
  
 +
* Paul and Gary: porting, perl scripts for querying datomic
 +
* Juancarlos: finished working through documentation
 +
* Adam:
 +
** Method for provisioning machines with Datomic, website, etc.
 +
** Using Docker to be able to quickly deploy going forward.
 +
** Makes future development much easier, good error reporting
  
== 2 ==
+
== Genetomic / curation database ==
 +
* TH: Is the genetomic instance in production?
 +
* TD: Not yet in production but close; requires input from Mary Ann and others.
 +
 
 +
== WormMethods chapters==
 +
PWS: getting some reviews back
 +
 
 +
== Models ==
 +
* PD: Deadline for proposals is next week
 +
 
 +
=== PATO ===
 +
* RL: Do we need to extend the model to accommodate the ontology? Is there a name class?
 +
* CG: Cost for creating a new class?
 +
* TD: already bringing in .obo files from other ontologies
 +
* Discussion about whether or not we will show the data on the website
 +
* CG: will create a new class for PATO
 +
* -- discussion about who handles obo->ace files: individual curators. do, they aren't handled generically.
 +
* DR: Hold off on changes for micropublication (?Expression_patt)
 +
 
 +
------> DISCONNECTED <------ sorry
 +
 
 +
=== Other model changes ===
 +
** Molecule
 +
** Expression_cluster
 +
** Human_disease (Xiaodong)
 +
** GO_term (addition to ?Paper)
 +
 
 +
* Raymond: should we go through a two tier process for models?
 +
** 1. Review process
 +
** 2. Put it into the models file
 +
 
 +
* PD: discussion typically occurs before the proposal hits the model list
 +
* RL: Caltech is dispersed and the expertise is deluded.  ky: although that is what I heard too; perhaps it's supposed to be "diluted"? -- ''Yes, it was a joke to see if anyone was paying attention''
 +
* WC: How do model changes work for Datomic?
 +
 
 +
* *PD: Will come up with a working document.*
 +
 
 +
== Intermine ==
 +
* SG: Webapp is running and still a few small issues
 +
 
 +
== GBrowse/JBrowse==
 +
* SC: most modencode data ported, will be promoting jbrowse in 250.
 +
 
 +
== cross MOD API grant ==
 +
* PWS: looks like will be funded

Latest revision as of 01:51, 5 September 2015

Agenda

1

2

Minutes

Datomic Progress

  • Paul and Gary: porting, perl scripts for querying datomic
  • Juancarlos: finished working through documentation
  • Adam:
    • Method for provisioning machines with Datomic, website, etc.
    • Using Docker to be able to quickly deploy going forward.
    • Makes future development much easier, good error reporting

Genetomic / curation database

  • TH: Is the genetomic instance in production?
  • TD: Not yet in production but close; requires input from Mary Ann and others.

WormMethods chapters

PWS: getting some reviews back

Models

  • PD: Deadline for proposals is next week

PATO

  • RL: Do we need to extend the model to accommodate the ontology? Is there a name class?
  • CG: Cost for creating a new class?
  • TD: already bringing in .obo files from other ontologies
  • Discussion about whether or not we will show the data on the website
  • CG: will create a new class for PATO
  • -- discussion about who handles obo->ace files: individual curators. do, they aren't handled generically.
  • DR: Hold off on changes for micropublication (?Expression_patt)

> DISCONNECTED <------ sorry

Other model changes

    • Molecule
    • Expression_cluster
    • Human_disease (Xiaodong)
    • GO_term (addition to ?Paper)
  • Raymond: should we go through a two tier process for models?
    • 1. Review process
    • 2. Put it into the models file
  • PD: discussion typically occurs before the proposal hits the model list
  • RL: Caltech is dispersed and the expertise is deluded. ky: although that is what I heard too; perhaps it's supposed to be "diluted"? -- Yes, it was a joke to see if anyone was paying attention
  • WC: How do model changes work for Datomic?
  • *PD: Will come up with a working document.*

Intermine

  • SG: Webapp is running and still a few small issues

GBrowse/JBrowse

  • SC: most modencode data ported, will be promoting jbrowse in 250.

cross MOD API grant

  • PWS: looks like will be funded