Difference between revisions of "WBConfCall 2015.09.03-Agenda and Minutes"

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------> DISCONNECTED <------ sorry
 
------> DISCONNECTED <------ sorry
  
* PD: other model changes
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=== Other model changes ===
 +
** Molecule
 
** Expression_cluster
 
** Expression_cluster
 
** Human_disease (Xiaodong)
 
** Human_disease (Xiaodong)
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* PD: discussion typically occurs before the proposal hits the model list
 
* PD: discussion typically occurs before the proposal hits the model list
* RL: Caltech is dispersed and the expertise is deluded.
+
* RL: Caltech is dispersed and the expertise is deluded. ky: although that is what I heard too; perhaps it's supposed to be "diluted"? -- ''Yes, it was a joke to see if anyone was paying attention''
 
* WC: How do model changes work for Datomic?
 
* WC: How do model changes work for Datomic?
  

Latest revision as of 01:51, 5 September 2015

Agenda

1

2

Minutes

Datomic Progress

  • Paul and Gary: porting, perl scripts for querying datomic
  • Juancarlos: finished working through documentation
  • Adam:
    • Method for provisioning machines with Datomic, website, etc.
    • Using Docker to be able to quickly deploy going forward.
    • Makes future development much easier, good error reporting

Genetomic / curation database

  • TH: Is the genetomic instance in production?
  • TD: Not yet in production but close; requires input from Mary Ann and others.

WormMethods chapters

PWS: getting some reviews back

Models

  • PD: Deadline for proposals is next week

PATO

  • RL: Do we need to extend the model to accommodate the ontology? Is there a name class?
  • CG: Cost for creating a new class?
  • TD: already bringing in .obo files from other ontologies
  • Discussion about whether or not we will show the data on the website
  • CG: will create a new class for PATO
  • -- discussion about who handles obo->ace files: individual curators. do, they aren't handled generically.
  • DR: Hold off on changes for micropublication (?Expression_patt)

> DISCONNECTED <------ sorry

Other model changes

    • Molecule
    • Expression_cluster
    • Human_disease (Xiaodong)
    • GO_term (addition to ?Paper)
  • Raymond: should we go through a two tier process for models?
    • 1. Review process
    • 2. Put it into the models file
  • PD: discussion typically occurs before the proposal hits the model list
  • RL: Caltech is dispersed and the expertise is deluded. ky: although that is what I heard too; perhaps it's supposed to be "diluted"? -- Yes, it was a joke to see if anyone was paying attention
  • WC: How do model changes work for Datomic?
  • *PD: Will come up with a working document.*

Intermine

  • SG: Webapp is running and still a few small issues

GBrowse/JBrowse

  • SC: most modencode data ported, will be promoting jbrowse in 250.

cross MOD API grant

  • PWS: looks like will be funded