Difference between revisions of "WBConfCall 2015.08.06-Agenda and Minutes"

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** staging ~ 1st of December
 
** staging ~ 1st of December
 
** live ~ early January
 
** live ~ early January
 +
 +
==WormMart End of Service==
 +
* will retire with WS251
  
 
== Gene Class Categories ==
 
== Gene Class Categories ==

Revision as of 15:59, 6 August 2015

Agenda

Intermine Status Update (Paulo Nuin and Sibyl)

Slides: http://wiki.wormbase.org/images/WormMine-v2.pdf

WS250

  • news items for the release letter
  • new worm: C.elegans (hawaii strain)
  • will be used as reference release for other sites (EG, etc.)

Function vs Mutant

  • Function vs Mutant Phenotype Gene Classes - Submissions to NCBI and EBI
  • see email thread: Function vs. mutant phenotype gene classes
  • categorise the gene classes

WS251 build dates

  • Models freeze, data upload

WormMart End of Service

Now is time to unplug?

Minutes

Intermine

  • Paolo (Alberta Health Services)
  • runs off AWS
  • total 1 week of building time first time (3/couple days for later attempts after optimisations)
  • ~180 GB
  • currently WS249 / will be updated to WS250 and the new intermine version for the WS250 release

WS250 / Hawaii

  • will show up on the Genome Browsers
  • with mapped gene models from N2

WS251 dates

  • seems fine
    • models 17th of September
    • upload 2nd of October
    • FTP 30th of October
    • staging ~ 1st of December
    • live ~ early January

WormMart End of Service

  • will retire with WS251

Gene Class Categories

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