WBConfCall 2015.07.16-Agenda and Minutes

Agenda

please submit your agenda items here

Ticketing System

• Where should we submit internal work tickets
• Should there be a project wide choice
• Doesn't feel that the website/helpdesk system is the natural place....or is it?
  • webcode and can attach tickets to code commits for tracking why development was necessary.
• Hinxton have:
  • Jira - working to consolidate information here.
  • Bitbucket (old washu/sanger retired and in process of migrating into jira
  • RT - Sanger worm-bug@sanger.ac.uk - Poss retirement? Effect Caltech paper submissions for Hinxton/UK curators
  • GitHub - retired and consolidated into
• Caltech have:
  • WormBase wiki?
  • Other internal trackers?
• OICR have:
  • GitHub main tracking system/HelpDesk
  • Other internal trackers?

RNASeq Expression Graphs

• In the IWM, Julie Ahringer expressed a wish for RNASeq expression graphs like Gexplore.
• Gary Williams has been working with Julie to produce graphs using a subset of the modENCODE data.
• When she is satisfied, what is the best way of transferring this work to the Web Team?
• It currently consists of a perl script that queries an acedb database for data from Gene, CDS, Transcript and Pseudogene classes to produce png images.

Naming of cis-regulatory sites

• Tim Schedl brought up last week in response to naming of "rex" sites (Recruitment Elements on X) from Barbara Meyers group
• Do people have strong opinions about how/if we could/should standardize names of sequence features or cis-regulatory elements in particular?