Difference between revisions of "WBConfCall 2015.07.16-Agenda and Minutes"
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* When she is satisfied, what is the best way of transferring this work to the Web Team? | * When she is satisfied, what is the best way of transferring this work to the Web Team? | ||
* It currently consists of a perl script that queries an acedb database for data from Gene, CDS, Transcript and Pseudogene classes to produce png images. | * It currently consists of a perl script that queries an acedb database for data from Gene, CDS, Transcript and Pseudogene classes to produce png images. | ||
+ | |||
+ | === Naming of cis-regulatory sites === | ||
+ | * Tim Schedl brought up last week in response to naming of "rex" sites (Recruitment Elements on X) from Barbara Meyers group | ||
+ | * Do people have strong opinions about how/if we could/should standardize names of sequence features or cis-regulatory elements in particular? |
Revision as of 15:26, 16 July 2015
Contents
Agenda
please submit your agenda items here
Ticketing System
- Where should we submit internal work tickets
- Should there be a project wide choice
- Doesn't feel that the website/helpdesk system is the natural place....or is it?
- webcode and can attach tickets to code commits for tracking why development was necessary.
- Hinxton have:
- Jira - working to consolidate information here.
- Bitbucket (old washu/sanger retired and in process of migrating into jira
- RT - Sanger worm-bug@sanger.ac.uk - Poss retirement? Effect Caltech paper submissions for Hinxton/UK curators
- GitHub - retired and consolidated into
- Caltech have:
- WormBase wiki?
- Other internal trackers?
- OICR have:
- GitHub main tracking system/HelpDesk
- Other internal trackers?
RNASeq Expression Graphs
- In the IWM, Julie Ahringer expressed a wish for RNASeq expression graphs like Gexplore.
- Gary Williams has been working with Julie to produce graphs using a subset of the modENCODE data.
- When she is satisfied, what is the best way of transferring this work to the Web Team?
- It currently consists of a perl script that queries an acedb database for data from Gene, CDS, Transcript and Pseudogene classes to produce png images.
Naming of cis-regulatory sites
- Tim Schedl brought up last week in response to naming of "rex" sites (Recruitment Elements on X) from Barbara Meyers group
- Do people have strong opinions about how/if we could/should standardize names of sequence features or cis-regulatory elements in particular?