Difference between revisions of "WBConfCall 2014.12.4-Agenda and Minutes"

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** Could be easier if we do not give them WBIDs but rather some unique serial number (numbers only) or prefix with the WS release number
 
** Could be easier if we do not give them WBIDs but rather some unique serial number (numbers only) or prefix with the WS release number
 
** In new database structure, these will likely not get names or IDs, just an internal identifier
 
** In new database structure, these will likely not get names or IDs, just an internal identifier
 +
* Paul Davis will tag the models tomorrow
  
 
== Wnt Signaling topic blog post ==
 
== Wnt Signaling topic blog post ==
 
* Chris will write something for WS246 release
 
* Chris will write something for WS246 release
 
* WS246 scheduled to go live at the end of December
 
* WS246 scheduled to go live at the end of December

Revision as of 16:54, 4 December 2014

Agenda

Models

All model changes currently planned for WS247 are on the WS247 Models wiki page

This includes this new class:

Topic 2

Minutes

Models

  • 11 items on models update wiki
  • Curators should check the wiki to double check
  • GO curation model change
    • Many GO annotations that are submitted to the GO consortium but never made it to WormBase
    • New model change should accommodate this data in WormBase
    • A new class has been made for GO annotations
    • Kimberly posted link to web page describing the details
    • Will now have 1000's more GO annotations in WormBase
    • ?GO_term and ?GO_annotation will be separate classes with XREFs to each other
    • New GO annotation objects will get their own set of unique IDs
    • How will the IDs be generated? Will they be (can they be) stable? History tracking?
    • GO pipeline uses UniProts common annotation tool which outputs a GAF file
    • We parse the GAF file into a .ACE file
    • If IDs are not going to be stable, we need to make sure they don't become visible to users
    • Could be easier if we do not give them WBIDs but rather some unique serial number (numbers only) or prefix with the WS release number
    • In new database structure, these will likely not get names or IDs, just an internal identifier
  • Paul Davis will tag the models tomorrow

Wnt Signaling topic blog post

  • Chris will write something for WS246 release
  • WS246 scheduled to go live at the end of December