Difference between revisions of "WBConfCall 2014.12.4-Agenda and Minutes"
From WormBaseWiki
Jump to navigationJump to searchm (→Models) |
m (→Agenda) |
||
(5 intermediate revisions by the same user not shown) | |||
Line 8: | Line 8: | ||
*For WS247, there is a new model for GO annotations that will allow us to have all GO curation in WormBase. | *For WS247, there is a new model for GO annotations that will allow us to have all GO curation in WormBase. | ||
**http://wiki.wormbase.org/index.php/Gene_Ontology#Proposed_new_.3FGO_annotation_class_for_WS247: | **http://wiki.wormbase.org/index.php/Gene_Ontology#Proposed_new_.3FGO_annotation_class_for_WS247: | ||
− | |||
− | |||
− | |||
= Minutes = | = Minutes = | ||
== Models == | == Models == | ||
− | * | + | * 11 items on models update wiki |
* Curators should check the wiki to double check | * Curators should check the wiki to double check | ||
* GO curation model change | * GO curation model change | ||
Line 24: | Line 21: | ||
** Will now have 1000's more GO annotations in WormBase | ** Will now have 1000's more GO annotations in WormBase | ||
** ?GO_term and ?GO_annotation will be separate classes with XREFs to each other | ** ?GO_term and ?GO_annotation will be separate classes with XREFs to each other | ||
+ | ** New GO annotation objects will get their own set of unique IDs | ||
+ | ** How will the IDs be generated? Will they be (can they be) stable? History tracking? | ||
+ | ** GO pipeline uses UniProts common annotation tool which outputs a GAF file | ||
+ | ** We parse the GAF file into a .ACE file | ||
+ | ** If IDs are not going to be stable, we need to make sure they don't become visible to users | ||
+ | ** Could be easier if we do not give them WBIDs but rather some unique serial number (numbers only) or prefix with the WS release number | ||
+ | ** In new database structure, these will likely not get names or IDs, just an internal identifier | ||
+ | * Paul Davis will tag the models tomorrow | ||
+ | |||
+ | == Wnt Signaling topic blog post == | ||
+ | * Chris will write something for WS246 release | ||
+ | * WS246 scheduled to go live at the end of December |
Latest revision as of 16:54, 4 December 2014
Agenda
Models
All model changes currently planned for WS247 are on the WS247 Models wiki page
This includes this new class:
- For WS247, there is a new model for GO annotations that will allow us to have all GO curation in WormBase.
Minutes
Models
- 11 items on models update wiki
- Curators should check the wiki to double check
- GO curation model change
- Many GO annotations that are submitted to the GO consortium but never made it to WormBase
- New model change should accommodate this data in WormBase
- A new class has been made for GO annotations
- Kimberly posted link to web page describing the details
- Will now have 1000's more GO annotations in WormBase
- ?GO_term and ?GO_annotation will be separate classes with XREFs to each other
- New GO annotation objects will get their own set of unique IDs
- How will the IDs be generated? Will they be (can they be) stable? History tracking?
- GO pipeline uses UniProts common annotation tool which outputs a GAF file
- We parse the GAF file into a .ACE file
- If IDs are not going to be stable, we need to make sure they don't become visible to users
- Could be easier if we do not give them WBIDs but rather some unique serial number (numbers only) or prefix with the WS release number
- In new database structure, these will likely not get names or IDs, just an internal identifier
- Paul Davis will tag the models tomorrow
Wnt Signaling topic blog post
- Chris will write something for WS246 release
- WS246 scheduled to go live at the end of December