Difference between revisions of "WBConfCall 2014.12.4-Agenda and Minutes"

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*For WS247, there is a new model for GO annotations that will allow us to have all GO curation in WormBase.  
 
*For WS247, there is a new model for GO annotations that will allow us to have all GO curation in WormBase.  
 
**http://wiki.wormbase.org/index.php/Gene_Ontology#Proposed_new_.3FGO_annotation_class_for_WS247:
 
**http://wiki.wormbase.org/index.php/Gene_Ontology#Proposed_new_.3FGO_annotation_class_for_WS247:
 
== Topic 2 ==
 
 
  
 
= Minutes =
 
= Minutes =
  
 
== Models ==
 
== Models ==
* 10 items on models update wiki
+
* 11 items on models update wiki
 
* Curators should check the wiki to double check
 
* Curators should check the wiki to double check
 
* GO curation model change
 
* GO curation model change
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** Kimberly posted link to web page describing the details
 
** Kimberly posted link to web page describing the details
 
** Will now have 1000's more GO annotations in WormBase
 
** Will now have 1000's more GO annotations in WormBase
 +
** ?GO_term and ?GO_annotation will be separate classes with XREFs to each other
 +
** New GO annotation objects will get their own set of unique IDs
 +
** How will the IDs be generated? Will they be (can they be) stable? History tracking?
 +
** GO pipeline uses UniProts common annotation tool which outputs a GAF file
 +
** We parse the GAF file into a .ACE file
 +
** If IDs are not going to be stable, we need to make sure they don't become visible to users
 +
** Could be easier if we do not give them WBIDs but rather some unique serial number (numbers only) or prefix with the WS release number
 +
** In new database structure, these will likely not get names or IDs, just an internal identifier
 +
* Paul Davis will tag the models tomorrow
 +
 +
== Wnt Signaling topic blog post ==
 +
* Chris will write something for WS246 release
 +
* WS246 scheduled to go live at the end of December

Latest revision as of 16:54, 4 December 2014

Agenda

Models

All model changes currently planned for WS247 are on the WS247 Models wiki page

This includes this new class:

Minutes

Models

  • 11 items on models update wiki
  • Curators should check the wiki to double check
  • GO curation model change
    • Many GO annotations that are submitted to the GO consortium but never made it to WormBase
    • New model change should accommodate this data in WormBase
    • A new class has been made for GO annotations
    • Kimberly posted link to web page describing the details
    • Will now have 1000's more GO annotations in WormBase
    • ?GO_term and ?GO_annotation will be separate classes with XREFs to each other
    • New GO annotation objects will get their own set of unique IDs
    • How will the IDs be generated? Will they be (can they be) stable? History tracking?
    • GO pipeline uses UniProts common annotation tool which outputs a GAF file
    • We parse the GAF file into a .ACE file
    • If IDs are not going to be stable, we need to make sure they don't become visible to users
    • Could be easier if we do not give them WBIDs but rather some unique serial number (numbers only) or prefix with the WS release number
    • In new database structure, these will likely not get names or IDs, just an internal identifier
  • Paul Davis will tag the models tomorrow

Wnt Signaling topic blog post

  • Chris will write something for WS246 release
  • WS246 scheduled to go live at the end of December