Difference between revisions of "WBConfCall 2014.12.4-Agenda and Minutes"

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= Agenda =
 
= Agenda =
  
== Topic 1 ==
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== Models ==
  
== Topic 2 ==
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All model changes currently planned for WS247 are on the [http://wiki.wormbase.org/index.php/WS247_Models.wrm WS247 Models wiki page]
  
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This includes this new class:
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*For WS247, there is a new model for GO annotations that will allow us to have all GO curation in WormBase.
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**http://wiki.wormbase.org/index.php/Gene_Ontology#Proposed_new_.3FGO_annotation_class_for_WS247:
  
 
= Minutes =
 
= Minutes =
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== Models ==
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* 11 items on models update wiki
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* Curators should check the wiki to double check
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* GO curation model change
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** Many GO annotations that are submitted to the GO consortium but never made it to WormBase
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** New model change should accommodate this data in WormBase
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** A new class has been made for GO annotations
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** Kimberly posted link to web page describing the details
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** Will now have 1000's more GO annotations in WormBase
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** ?GO_term and ?GO_annotation will be separate classes with XREFs to each other
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** New GO annotation objects will get their own set of unique IDs
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** How will the IDs be generated? Will they be (can they be) stable? History tracking?
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** GO pipeline uses UniProts common annotation tool which outputs a GAF file
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** We parse the GAF file into a .ACE file
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** If IDs are not going to be stable, we need to make sure they don't become visible to users
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** Could be easier if we do not give them WBIDs but rather some unique serial number (numbers only) or prefix with the WS release number
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** In new database structure, these will likely not get names or IDs, just an internal identifier
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* Paul Davis will tag the models tomorrow
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== Wnt Signaling topic blog post ==
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* Chris will write something for WS246 release
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* WS246 scheduled to go live at the end of December

Latest revision as of 16:54, 4 December 2014

Agenda

Models

All model changes currently planned for WS247 are on the WS247 Models wiki page

This includes this new class:

Minutes

Models

  • 11 items on models update wiki
  • Curators should check the wiki to double check
  • GO curation model change
    • Many GO annotations that are submitted to the GO consortium but never made it to WormBase
    • New model change should accommodate this data in WormBase
    • A new class has been made for GO annotations
    • Kimberly posted link to web page describing the details
    • Will now have 1000's more GO annotations in WormBase
    • ?GO_term and ?GO_annotation will be separate classes with XREFs to each other
    • New GO annotation objects will get their own set of unique IDs
    • How will the IDs be generated? Will they be (can they be) stable? History tracking?
    • GO pipeline uses UniProts common annotation tool which outputs a GAF file
    • We parse the GAF file into a .ACE file
    • If IDs are not going to be stable, we need to make sure they don't become visible to users
    • Could be easier if we do not give them WBIDs but rather some unique serial number (numbers only) or prefix with the WS release number
    • In new database structure, these will likely not get names or IDs, just an internal identifier
  • Paul Davis will tag the models tomorrow

Wnt Signaling topic blog post

  • Chris will write something for WS246 release
  • WS246 scheduled to go live at the end of December