WBConfCall 2014.09.03-Agenda and Minutes

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Adding worm disease models/data to the Monarch Initiative website

(From Ranjana)

Model change requests for WS246

  • Wen and Daniela: model changes to #Qualifier so that we can combine life stage with anatomy term in expression pattern annotation. We hope these changes can be included in WS246 models.wrm. We just need to add Life_stage and Anatomy_term fields to #Qualifier.
#Qualifier    Certain Text
              Uncertain Text   
              Partial Text  
              Anatomy_term ?Anatomy_term //Added by Wen and Daniela                
              Life_stage  ?Life_stage //Added by Wen and Daniela
  • Ranjana: Addition of a new tag, 'Automated_description' to 'Structured_description' under ?Gene.

--James and I are working on a project here at Caltech, which will generate completely automated descriptions for genes based on data already curated in WormBase. Currently these data are: Orthology/Homology and the GO annotations for Process, Function and Cell component. Since this is a significant departure from the way the human written ones were generated, I'd like to request a new tag 'Automated_description' under 'Structured_description' in the Gene class for WS246.


Structured_description	Provisional_description
                       Automated_description  <--New tag