Difference between revisions of "WBConfCall 2014.09.03-Agenda and Minutes"
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= Agenda = | = Agenda = | ||
| − | == Adding worm disease models/data to the Monarch Initiative website (Ranjana) | + | == Adding worm disease models/data to the Monarch Initiative website== |
| − | + | (From Ranjana) | |
*http://monarchinitiative.org/ : connects phenotypes, diseases, models, and genes for translational research across species (People involved: Melissa Haendel, Chris Mungall, Suzi Lewis, Nicole Washington and others) | *http://monarchinitiative.org/ : connects phenotypes, diseases, models, and genes for translational research across species (People involved: Melissa Haendel, Chris Mungall, Suzi Lewis, Nicole Washington and others) | ||
*Last time I spoke to them, seems like they were still working on a lot of stuff; today, got a very enthusiastic response from Chris and Nicole about including worm disease model data | *Last time I spoke to them, seems like they were still working on a lot of stuff; today, got a very enthusiastic response from Chris and Nicole about including worm disease model data | ||
Revision as of 21:11, 3 September 2014
Agenda
Adding worm disease models/data to the Monarch Initiative website
(From Ranjana)
- http://monarchinitiative.org/ : connects phenotypes, diseases, models, and genes for translational research across species (People involved: Melissa Haendel, Chris Mungall, Suzi Lewis, Nicole Washington and others)
- Last time I spoke to them, seems like they were still working on a lot of stuff; today, got a very enthusiastic response from Chris and Nicole about including worm disease model data
- Pointed them to our gene-disease association file, on the FTP site:ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/ONTOLOGY/disease_association.WS245.wb, however this is incomplete since it doesn't have the disease model descriptions, and the manually curated OMIM connections, so also sent them the WS245 caltech manual curations file
- Will wait to see whether they can work with the above files or would they need something else
- Can we link to monarchinitiative.org from WormBase--link to them from the DO term page? there is documentation at http://monarchinitiative.org/page/services and http://monarchinitiative.org/docs/files/api-js.html?
- A page example for Parkinson's Disease: http://monarchinitiative.org/disease/DOID_14330, from here one can go to the different tabs for Models, Genes, Compare, etc.
