Difference between revisions of "WBConfCall 2014.09.03-Agenda and Minutes"
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== Adding worm disease models/data to the Monarch Initiative website== | == Adding worm disease models/data to the Monarch Initiative website== | ||
| − | * | + | *http://monarchinitiative.org/ : connects phenotypes, diseases, models, and genes for translational research across species (People involved: Melissa Haendel, Chris Mungall, Suzi Lewis, Nicole Washington and others) |
| + | *Last time I spoke to them, seems like they were still working on a lot of stuff; today, got a very enthusiastic response from Chris and Nicole about including worm disease model data | ||
| + | *Pointed them to our gene-disease association file, on the FTP site:ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/ONTOLOGY/disease_association.WS245.wb, however this is incomplete since it doesn't have the disease model descriptions, and the manually curated OMIM connections, so also sent them the WS245 caltech manual curations file | ||
| + | *Will wait to see whether they can work with the above files or would they need something else | ||
| + | *Can we link to monarchinitiative.org from WormBase--link to them from the DO term page? there is documentation at http://monarchinitiative.org/page/services and http://monarchinitiative.org/docs/files/api-js.html? | ||
| + | *A page example for Parkinson's Disease: http://monarchinitiative.org/disease/DOID_14330, from here one can go to the different tabs for Models, Genes, Compare, etc. | ||
Revision as of 21:09, 3 September 2014
Agenda
Adding worm disease models/data to the Monarch Initiative website
- http://monarchinitiative.org/ : connects phenotypes, diseases, models, and genes for translational research across species (People involved: Melissa Haendel, Chris Mungall, Suzi Lewis, Nicole Washington and others)
- Last time I spoke to them, seems like they were still working on a lot of stuff; today, got a very enthusiastic response from Chris and Nicole about including worm disease model data
- Pointed them to our gene-disease association file, on the FTP site:ftp://ftp.sanger.ac.uk/pub/wormbase/releases/WS245/ONTOLOGY/disease_association.WS245.wb, however this is incomplete since it doesn't have the disease model descriptions, and the manually curated OMIM connections, so also sent them the WS245 caltech manual curations file
- Will wait to see whether they can work with the above files or would they need something else
- Can we link to monarchinitiative.org from WormBase--link to them from the DO term page? there is documentation at http://monarchinitiative.org/page/services and http://monarchinitiative.org/docs/files/api-js.html?
- A page example for Parkinson's Disease: http://monarchinitiative.org/disease/DOID_14330, from here one can go to the different tabs for Models, Genes, Compare, etc.
