Difference between revisions of "WBConfCall 2014.04.03-Agenda and Minutes"
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* When we can't follow a publication, we reference a WB object | * When we can't follow a publication, we reference a WB object | ||
* Sometimes GO annotations do not have a paper, and so use a different reference object, method | * Sometimes GO annotations do not have a paper, and so use a different reference object, method | ||
| + | * Proposal: Use a WormBase object as a reference for all GAFs aside from the GeneOntology GAFs | ||
Revision as of 15:48, 3 April 2014
Agenda
Minutes
Gene Association Files (GAFs)
- Anatomy, life stage, disease association files
- Kevin Howe will be generating these files, in general
- Will be difficult or impossible to abide by GAF rules exactly, but can work it out
- Column 6 needs to be resolved: Reference or WormBase object (WBPaper or other) [primary source of the association]
- Some anatomy terms are linked to multiple references, causes a problem
- Phenotypes don't always have a reference, causes a problem
- When we can't follow a publication, we reference a WB object
- Sometimes GO annotations do not have a paper, and so use a different reference object, method
- Proposal: Use a WormBase object as a reference for all GAFs aside from the GeneOntology GAFs
